Browse Element(s) Details


Os.30724.2.S1_at

Description gb:AK108420.1
DB_XREF= gi:32993629
TID=Os.30724.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H12, full insert sequence.
FL= gb:AK108420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5182011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30724.2.S1_at--824--11Chr02:31743233..31743257 (25 bp)
ATTGGCCCAACCTCGAGAGCTGCTA
LOC_Os02g51820
Os.30724.2.S1_at--529--5011Chr02:31743281..31743305 (25 bp)
GCAGGCTGCTCGAGTAGAACACCAA
LOC_Os02g51820
Os.30724.2.S1_at--1140--5491Chr02:31743297..31743321 (25 bp)
GAACACCAACACTACACGCGGAAGG
LOC_Os02g51820
Os.30724.2.S1_at--433--9491Chr02:31743346..31743370 (25 bp)
TCTCCGTCCAGCCAAATACGTGTAT
LOC_Os02g51820
Os.30724.2.S1_at--203--2391Chr02:31743415..31743439 (25 bp)
AAACTCAGTGTAGCCGTGCAGGGTA
LOC_Os02g51820
Os.30724.2.S1_at--839--5011Chr02:31743432..31743456 (25 bp)
GCAGGGTACCACATCATTTTAGCCA
LOC_Os02g51820
Os.30724.2.S1_at--90--4431Chr02:31743453..31743477 (25 bp)
GCCAGTGCATTCACTTGTGCGTATG
LOC_Os02g51820
Os.30724.2.S1_at--1074--7291Chr02:31743469..31743493 (25 bp)
GTGCGTATGTTCACAGCGGCAGTAA
LOC_Os02g51820
Os.30724.2.S1_at--1095--6811Chr02:31743519..31743543 (25 bp)
GTTTATTTACTCCTGAACTCTATAG
LOC_Os02g51820
Os.30724.2.S1_at--128--6471Chr02:31743566..31743590 (25 bp)
GATACAATCACCTTCGGCAAACGTG
LOC_Os02g51820
Os.30724.2.S1_at--627--2951Chr02:31743633..31743657 (25 bp)
AATGGAGTGCCTACGAGTTGTACCC
LOC_Os02g51820
Target Sequence 
ATTGGCCCAACCTCGAGAGCTGCTACACCCGCTGGTACGCAGAGTCGCGCAGGCTGCTCGAGTAGAACACCAACACTACA
CGCGGAAGGAGTGCGGACGCCGGTGTGCCTCCGTCTCCGTCCAGCCAAATACGTGTATCATTGTAAGTGTTAACGTGTAT
CGTGTACAGCATAGCAGTTAGCAAACTCAGTGTAGCCGTGCAGGGTACCACATCATTTTAGCCAGTGCATTCACTTGTGC
GTATGTTCACAGCGGCAGTAATCGTATGACAGTTATGTATTCTGCAGTTTATTTACTCCTGAACTCTATAGTGTAAGGGT
ATCTGCAAACGAAGATACAATCACCTTCGGCAAACGTGTAAATCATCTAGTAGCAAATAAAGGCATTCTATCAGTAAAAT
AATGGAGTGCCTACGAGTTGTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30724.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis