Browse Element(s) Details


Os.17938.1.A1_s_at

Description gb:CR292636
DB_XREF= gi:44679202
DB_XREF=CR292636
CLONE=y766b07p3
TID=Os.17938.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17938 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565470.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5184011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17938.1.A1_s_at--291--8651Chr02:31751890..31751914 (25 bp)
TGGGACATACTTGTCATGGAGGCTC
LOC_Os02g51840
Os.17938.1.A1_s_at--394--9191Chr02:31751924..31751948 (25 bp)
TGCCTTCAGATGATGACAAGCAGAA
LOC_Os02g51840
Os.17938.1.A1_s_at--570--6471Chr02:31751958..31751982 (25 bp)
GATAAACCTTATAGACTGTCCTGAT
LOC_Os02g51840
Os.17938.1.A1_s_at--44--1411Chr02:31751970..31751994 (25 bp)
AGACTGTCCTGATCATCCTAGTAGA
LOC_Os02g51840
Os.17938.1.A1_s_at--947--6431Chr02:31751980..31752004 (25 bp)
GATCATCCTAGTAGAGTATCCGACT
LOC_Os02g51840
Os.17938.1.A1_s_at--570--6911Chr02:31751995..31752019 (25 bp)
GTATCCGACTGTGAGAGTATTCCTT
LOC_Os02g51840
Os.17938.1.A1_s_at--750--5731Chr02:31752001..31752025 (25 bp)
GACTGTGAGAGTATTCCTTGGGAAC
LOC_Os02g51840
Os.17938.1.A1_s_at--836--8051Chr02:31752036..31752060 (25 bp)
GGAGAGTTAACTATATACCAACTTG
LOC_Os02g51840
Os.17938.1.A1_s_at--122--1311Chr02:31752065..31752089 (25 bp)
AGAGTTGAAGACACCTACCTTTCTG
LOC_Os02g51840
Os.17938.1.A1_s_at--260--3711Chr02:31752079..31752103 (25 bp)
CTACCTTTCTGCCAACACTCAGAAA
LOC_Os02g51840
Os.17938.1.A1_s_at--517--2391Chr02:31752247..31752271 (25 bp)
AAACTTTTCTTACAGCCAGCTGTCG
LOC_Os02g51840
Target Sequence 
TGGGACATACTTGTCATGGAGGCTCNTCTTCATGTGCCTTCAGATGATGACAAGCAGAAAACACTCAAGATAAACCTTAT
AGACTGTCCTGATCATCCTAGTAGAGTATCCGACTGTGAGAGTATTCCTTGGGAACGTNAAGAACAGGAGAGTTAACTAT
ATACCAACTTGATGTAGAGTTGAAGACACCTACCTTTCTGCCAACACTCAGAAAAAANAGAGCANATCGGTCTCNCATAG
CGATGGCTGATTCGGTGCTTGNCTTCCCTCTCTATAGCGTGTGTTTGGGCGGTTGGCACATGGTTCGGGGCGTGTGCTCN
GGTGCACATCCTTCCTCGACANCCAGCTGTNGATGTNAAACTTTTCTTACAGCCAGCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17938.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis