Browse Element(s) Details


Os.22612.1.A1_at

Description gb:AK062624.1
DB_XREF= gi:32972642
TID=Os.22612.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 26645 disulfide isomerase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B12, full insert sequence.
FL= gb:AK062624.1 gb:AY224470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5185011/11adenosine 5'-phosphosulfate reductase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22612.1.A1_at--139--1011Chr02:31753708..31753732 (25 bp)
AGGATACTTATCTAGCACTGGCAAC
LOC_Os02g51850
Os.22612.1.A1_at--829--3271Chr02:31753645..31753669 (25 bp)
CAAAGATAGGTTCCTTCGCCAAACG
LOC_Os02g51850
Os.22612.1.A1_at--766--191Chr02:31753570..31753594 (25 bp)
ATTTCTTCACCTACCTTGAACAAGC
LOC_Os02g51850
Os.22612.1.A1_at--870--10431Chr02:31753531..31753555 (25 bp)
TTAGGTTATACCCTTCGAAGCGAGG
LOC_Os02g51850
Os.22612.1.A1_at--340--2851Chr02:31753463..31753487 (25 bp)
AAGTCATTAGCATCCGTCTCAATCG
LOC_Os02g51850
Os.22612.1.A1_at--374--1091Chr02:31753388..31753412 (25 bp)
AGTGCAACTTTTTTGTCCGCAGGGA
LOC_Os02g51850
Os.22612.1.A1_at--994--5231Chr02:31753327..31753351 (25 bp)
GAATCTGTTGTAACCGGCTTTGTTA
LOC_Os02g51850
Os.22612.1.A1_at--593--9751Chr02:31753281..31753305 (25 bp)
TAATCACTTTTACCATTTCCCATTG
LOC_Os02g51850
Os.22612.1.A1_at--207--6771Chr02:31753257..31753281 (25 bp)
GTTACTTTCACTTCGGTTTATAGCT
LOC_Os02g51850
Os.22612.1.A1_at--1076--10151Chr02:31753239..31753263 (25 bp)
TATAGCTTTGCCTCTTGCCTAAATT
LOC_Os02g51850
Os.22612.1.A1_at--294--7811Chr02:31753159..31753183 (25 bp)
GGTCTCTGCAATCCCAAGTTGATGA
LOC_Os02g51850
Target Sequence 
AGGATACTTATCTAGCACTGGCAACTGCATTTGTAATCTTGAGGTTACTGTATCTTCTCTTTCCAAAGATAGGTTCCTTC
GCCAAACGGGCGTGGAGGAGGCATACTCTTTTTCCAAACTTGGTGGGTGTGCATGAATATTTCTTCACCTACCTTGAACA
AGCAAGACACAAATTCTTTAGGTTATACCCTTCGAAGCGAGGGAATTTACAGGAAGGGGCCAGGAATGCCACTGCTTGGG
CTTCCAAGTCATTAGCATCCGTCTCAATCGGAGAACCAAGCACTATTGGAAGGACAAACTCTACAAATGAGCTAAGATAA
AGTGCAACTTTTTTGTCCGCAGGGATATTTGTACAGTAGAGTATCAGGATATGAACACTAAGAATCTGTTGTAACCGGCT
TTGTTAGATATTGTAACATCCTTAGAATAATCACTTTTACCATTTCCCATTGTTACTTTCACTTCGGTTTATAGCTTTGC
CTCTTGCCTAAATTCATACTCTTGGGAGTATGTGTTGCAANANANNNTNNNNNNGNNAAANGTGTACATGGTCTCTGCAA
TCCCAAGTTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22612.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis