Browse Element(s) Details


Os.16736.1.S1_at

Description gb:AK064876.1
DB_XREF= gi:32974894
TID=Os.16736.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000J16, full insert sequence.
FL= gb:AK064876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3927011/11NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16736.1.S1_at--72--5911Chr01:22415201..22415225 (25 bp)
GAGCAGAGCAAGTGAAAACTGCCAT
LOC_Os01g39270
Os.16736.1.S1_at--642--2371Chr01:22415186..22415210 (25 bp)
AAACTGCCATTGATGCATAGGAAAC
LOC_Os01g39270
Os.16736.1.S1_at--282--3611Chr01:22415131..22415155 (25 bp)
CATTGTCTATCAATGAACTGAAACC
LOC_Os01g39270
Os.16736.1.S1_at--1000--5451Chr01:22415117..22415141 (25 bp)
GAACTGAAACCATGGCAATTCTCCC
LOC_Os01g39270
Os.16736.1.S1_at--610--5551Chr01:22415112..22415136 (25 bp)
GAAACCATGGCAATTCTCCCAATTT
LOC_Os01g39270
Os.16736.1.S1_at--994--2631Chr01:22415110..22415134 (25 bp)
AACCATGGCAATTCTCCCAATTTTG
LOC_Os01g39270
Os.16736.1.S1_at--1149--3491Chr01:22415107..22415131 (25 bp)
CATGGCAATTCTCCCAATTTTGTTA
LOC_Os01g39270
Os.16736.1.S1_at--1119--8211Chr01:22415104..22415128 (25 bp)
GGCAATTCTCCCAATTTTGTTACAG
LOC_Os01g39270
Os.16736.1.S1_at--357--3151Chr01:22415101..22415125 (25 bp)
AATTCTCCCAATTTTGTTACAGAAG
LOC_Os01g39270
Os.16736.1.S1_at--69--3811Chr01:22415097..22415121 (25 bp)
CTCCCAATTTTGTTACAGAAGTAAT
LOC_Os01g39270
Os.16736.1.S1_at--216--5291Chr01:22415080..22415104 (25 bp)
GAAGTAATACTTGTTTTTCAGGAAT
LOC_Os01g39270
Target Sequence 
GAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACNAAATGTTTGTTCAGCTGCCANTTGATGCAGCATTGTCTA
TCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis