Browse Element(s) Details


Os.16752.1.S1_at

Description gb:CA767165
DB_XREF= gi:27546026
DB_XREF=AF53-Rpf_02_J09_T7_037.ab1
CLONE=C0000609
TID=Os.16752.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.24 (P0691E06.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16752.1.S1_at--235--711Chr01:34238293..34238317 (25 bp)
ATGAGGGTTGCAGTCGTGATCTTCA
LOC_Os01g58660
Os.16752.1.S1_at--687--8771Chr01:34238345..34238369 (25 bp)
TGTTATGAATCCTGCAAACCCAAAG
LOC_Os01g58660
Os.16752.1.S1_at--238--6491Chr01:34238369..34238393 (25 bp)
GATAGAACCCTCAAACGCATGCTGT
LOC_Os01g58660
Os.16752.1.S1_at--359--4991Chr01:34238385..34238409 (25 bp)
GCATGCTGTAGCGTAATCCAAAAGG
LOC_Os01g58660
Os.16752.1.S1_at--575--571Chr01:34238400..34238424 (25 bp)
ATCCAAAAGGCAAACGTCCCATGTT
LOC_Os01g58660
Os.16752.1.S1_at--934--7231Chr01:34238415..34238439 (25 bp)
GTCCCATGTTTATGCTCCAAGGTCA
LOC_Os01g58660
Os.16752.1.S1_at--1028--2891Chr01:34238472..34238496 (25 bp)
AAGGTCGTGTATGTTGCTGACTATT
LOC_Os01g58660
Os.16752.1.S1_at--1010--52Chr09:20685347..20685406 (24 bp)
ATTGCAAGAAGCCACTACAGCCTGG
NONE
Os.16752.1.S1_at--611--3731Chr01:34238508..34238532 (25 bp)
CTACAGCCTGGCTCCAAGTGTGGAA
LOC_Os01g58660
Os.16752.1.S1_at--450--7471Chr01:34238525..34238641 (25 bp)
GTGTGGAAGCTACACGATTCCGTCT
LOC_Os01g58660
Os.16752.1.S1_at--851--6571Chr01:34238632..34238656 (25 bp)
GATTCCGTCTCTACAACAATAATTG
LOC_Os01g58660
Target Sequence 
ATGAGGGTTGCAGTCGTGATCTTCAGGACTTAATTATGGAGTGTCAAAAATATGTTATGAATCCTGCAAACCCAAAGATA
GAACCCTCAAACGCATGCTGTAGCGTAATCCAAAAGGCAAACGTCCCATGTTTATGCTCCAAGGTCACTAAAGAGATTGA
GAAGATAGTGTGCATGGAGAAGGTCGTGTATGTTGCTGACTATTGCAAGAAGCCACTACAGCCTGGCTCCAAGTGTGGAA
GCTACACGATTCCGTCTCTACAACAATAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis