Browse Element(s) Details


Os.55436.1.S1_at

Description gb:AK108093.1
DB_XREF= gi:32993302
TID=Os.55436.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A05, full insert sequence.
FL= gb:AK108093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5867011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55436.1.S1_at--518--6031Chr01:34241237..34241261 (25 bp)
TGACTACAGGCCCAGGTTCGTTAGC
LOC_Os01g58670
Os.55436.1.S1_at--504--4551Chr01:34241246..34241270 (25 bp)
GCCCAGGTTCGTTAGCATCGACGAT
LOC_Os01g58670
Os.55436.1.S1_at--610--9991Chr01:34241321..34241345 (25 bp)
TAGCCTTCAGGGTCAGTGTAGCGGT
LOC_Os01g58670
Os.55436.1.S1_at--1008--6311Chr01:34241346..34241370 (25 bp)
GATGAACCGTTGTTGATCGGCAGAA
LOC_Os01g58670
Os.55436.1.S1_at--680--8851Chr01:34241359..34241383 (25 bp)
TGATCGGCAGAACGTACCTATGTGT
LOC_Os01g58670
Os.55436.1.S1_at--889--3991Chr01:34241371..34241395 (25 bp)
CGTACCTATGTGTTTTGCGTCGTAA
LOC_Os01g58670
Os.55436.1.S1_at--499--10651Chr01:34241385..34241409 (25 bp)
TTGCGTCGTAAATCGATCTCCGTGT
LOC_Os01g58670
Os.55436.1.S1_at--1102--9371Chr01:34241397..34241421 (25 bp)
TCGATCTCCGTGTTTCTGTTGTAAA
LOC_Os01g58670
Os.55436.1.S1_at--474--4251Chr01:34241404..34241428 (25 bp)
CCGTGTTTCTGTTGTAAATCGTCTT
LOC_Os01g58670
Os.55436.1.S1_at--759--2271Chr01:34241419..34241443 (25 bp)
AAATCGTCTTAGTTCTCTCTCTGGA
LOC_Os01g58670
Os.55436.1.S1_at--319--3771Chr01:34241435..34241459 (25 bp)
CTCTCTGGATAATAAATTGCGCTCT
LOC_Os01g58670
Target Sequence 
TGACTACAGGCCCAGGTTCGTTAGCATCGACGATGGGCTCAGATACTTGCAGCAATTCCTCCTGTGAAATGCGCGTTTCT
CTTTTAGCCTTCAGGGTCAGTGTAGCGGTGATGAACCGTTGTTGATCGGCAGAACGTACCTATGTGTTTTGCGTCGTAAA
TCGATCTCCGTGTTTCTGTTGTAAATCGTCTTAGTTCTCTCTCTGGATAATAAATTGCGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis