Browse Element(s) Details


Os.11682.1.S1_at

Description gb:AK066643.1
DB_XREF= gi:32976661
TID=Os.11682.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) diphosphonucleotide phosphatase -like protein (P0691E06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071K14, full insert sequence.
FL= gb:AK066643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5864011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11682.1.S1_at--94--5491Chr01:34229734..34229758 (25 bp)
GAACTTCGTTTCCTCTGTTGAGCCA
LOC_Os01g58640
Os.11682.1.S1_at--214--10771Chr01:34229751..34229775 (25 bp)
TTGAGCCACTCTTGCTTAACCACAA
LOC_Os01g58640
Os.11682.1.S1_at--762--4371Chr01:34229770..34229891 (25 bp)
CCACAAGGTCGATTTGGTCTTCTTT
LOC_Os01g58640
Os.11682.1.S1_at--983--7131Chr01:34229883..34229907 (25 bp)
GTCTTCTTTGGCCATGTACACAACT
LOC_Os01g58640
Os.11682.1.S1_at--215--5451Chr01:34229914..34229938 (25 bp)
GAACGTGTGCGGTATACCAGGGCAA
LOC_Os01g58640
Os.11682.1.S1_at--190--5091Chr01:34230003..34230027 (25 bp)
GCACCTGTTCATGCCGTTGTTGGAG
LOC_Os01g58640
Os.11682.1.S1_at--668--7871Chr01:34230034..34230058 (25 bp)
GGTTCAACTTGGATGGCTTCCCTAA
LOC_Os01g58640
Os.11682.1.S1_at--400--6611Chr01:34230059..34230263 (25 bp)
GATTGGTCTGCATAGCTGGAGCTTA
LOC_Os01g58640
Os.11682.1.S1_at--133--6511Chr01:34230283..34230307 (25 bp)
GATATGCCAGGGTACATGCGACGAA
LOC_Os01g58640
Os.11682.1.S1_at--176--7051Chr01:34230956..34230980 (25 bp)
GTAAACTCGAACACGTCGGCAGTCC
LOC_Os01g58640
Os.11682.1.S1_at--696--2031Chr01:34231138..34231162 (25 bp)
ACTATCAGGCTGTGTACGCGGCTAC
LOC_Os01g58640
Target Sequence 
GAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCACAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACG
AGAGAACGTGTGCGGTATACCAGGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAAC
AGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTCTGCA
TAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTG
TAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTG
ATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAA
TTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis