Browse Element(s) Details


Os.22639.1.S1_at

Description gb:CA759756
DB_XREF= gi:25803795
DB_XREF=BR060005B20F05.ab1
CLONE=BR060005B20F05.ab1
TID=Os.22639.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.22639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.18 (P0691E06.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g586004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58580Os.8591.1.S1_at11/111+34195990..34198683latex-abundant protein, putative, expressed
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22639.1.S1_at--106--111Chr01:34209140..34209164 (25 bp)
ATTCGAGCTCACTGCTGATCGAGGC
NONE
Os.22639.1.S1_at--854--1571Chr01:34209135..34209159 (25 bp)
AGCTCACTGCTGATCGAGGCCATGT
NONE
Os.22639.1.S1_at--510--9871Chr01:34209029..34209053 (25 bp)
TACAGGCCGGACCTGTGGTCTCGTT
LOC_Os01g58600
Os.22639.1.S1_at--476--7491Chr01:34209015..34209039 (25 bp)
GTGGTCTCGTTGCTTTCGAATGTAT
LOC_Os01g58600
Os.22639.1.S1_at--307--4891Chr01:34209004..34209028 (25 bp)
GCTTTCGAATGTATGCTGCTCTATG
LOC_Os01g58600
Os.22639.1.S1_at--534--9091Chr01:34208988..34209012 (25 bp)
TGCTCTATGCACATTGCCGGCTGTT
LOC_Os01g58600
Os.22639.1.S1_at--454--10751Chr01:34208908..34208932 (25 bp)
TTGACCTATGCATCCATGGAAACGC
NONE
Os.22639.1.S1_at--1154--811Chr01:34208893..34208917 (25 bp)
ATGGAAACGCCACATTCCTGCGGCT
NONE
Os.22639.1.S1_at--400--2051Chr01:34208882..34208906 (25 bp)
ACATTCCTGCGGCTTCCGTCAATCT
NONE
Os.22639.1.S1_at--192--4791Chr01:34208812..34208836 (25 bp)
GCTCGTGTCCCTGTAATGTTAAGAG
NONE
Os.22639.1.S1_at--532--7071Chr01:34208806..34208830 (25 bp)
GTCCCTGTAATGTTAAGAGTTCGTG
NONE
Target Sequence 
ATTCGAGCTCACTGCTGATCGAGGCCATGTCGACCGGTCACCTCCGCGTCTTCGNGNTCTTNCTNGTCGTGCAAGTTTAC
CTGCNTGCGATGATGGCCGCGCNATGGACGGTACAGGCCGGACCTGTGGTCTCGTTGCTTTCGAATGTATGCTGCTCTAT
GCACATTGCCGGCTGTTGCCCCGCCATTGCCGGCGGNGNTGGCGGCAGNGGCGATGCNNCCAAGGCCAAGCNTTGACCTA
TGCATCCATGGAAACGCCACATTCCTGCGGCTTCCGTCAATCTCCTCCCNGGTATTTNGGTATCCAGCATTGTGACANGA
NTAAACAAATNGCTCGTGTCCCTGTAATGTTAAGAGTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis