Browse Element(s) Details


Os.8591.1.S1_at

Description gb:AK072822.1
DB_XREF= gi:32982845
TID=Os.8591.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative latex-abundant protein (P0691E06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138I07, full insert sequence.
FL= gb:AK072822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5858011/11latex-abundant protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58560Os.20602.2.S1_x_at11/111+34173699..34175879hAT family dimerisation domain containing protein
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58580Os.8591.1.S1_at11/111+34195990..34198683latex-abundant protein, putative, expressed
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8591.1.S1_at--795--4791Chr01:34198084..34198108 (25 bp)
GCTCCCTGGCTCAAGAGTTTCTGAA
LOC_Os01g58580
Os.8591.1.S1_at--46--4731Chr01:34198188..34198212 (25 bp)
GCTGGGACTAAGACATGGGCACCTA
LOC_Os01g58580
Os.8591.1.S1_at--1156--8631Chr01:34198203..34198227 (25 bp)
TGGGCACCTAACAACGGCATTCTGA
LOC_Os01g58580
Os.8591.1.S1_at--929--1791Chr01:34198271..34198295 (25 bp)
ACCGCAGGGTTCTTCATATGGTGCC
LOC_Os01g58580
Os.8591.1.S1_at--272--271Chr01:34198286..34198310 (25 bp)
ATATGGTGCCCTCAGCAATGCTATC
LOC_Os01g58580
Os.8591.1.S1_at--793--3011Chr01:34198302..34198326 (25 bp)
AATGCTATCCAGACCATTCTTGCAG
LOC_Os01g58580
Os.8591.1.S1_at--316--2731Chr01:34198366..34198390 (25 bp)
AAGCACGGTCATTGCTGGCTAAGCA
LOC_Os01g58580
Os.8591.1.S1_at--36--8131Chr01:34198410..34198434 (25 bp)
GGACTTTACTGCAGCGATGACCATG
LOC_Os01g58580
Os.8591.1.S1_at--369--5351Chr01:34198527..34198551 (25 bp)
GAAGCTTCCCTGGTATACGTTACTG
LOC_Os01g58580
Os.8591.1.S1_at--212--8811Chr01:34198550..34198574 (25 bp)
TGTTGCGTGTCTATGGCAGTACCAT
LOC_Os01g58580
Os.8591.1.S1_at--805--2591Chr01:34198578..34198602 (25 bp)
AACGCTATGCTTTGATGTAGACCAT
LOC_Os01g58580
Target Sequence 
GCTCCCTGGCTCAAGAGTTTCTGAAGGTTAAGCTTGAAGGCAACGAGGAAGAAGCTTTCAAGCCAGCTATAGAACAAGAG
GTTCACAGTGTTGACGAGGTGTATGCTGGGACTAAGACATGGGCACCTAACAACGGCATTCTGATCAGTGGGTGCCAAAG
TAATCAAACATCAGCCGATGCAACCACACCGCAGGGTTCTTCATATGGTGCCCTCAGCAATGCTATCCAGACCATTCTTG
CAGACAANCGCGGAAATGTGTCAAACAAGGACCTTGTGATGAAAGCACGGTCATTGCTGGCTAAGCAAGGATACACTCAG
CAGCCTGGACTTTACTGCAGCGATGACCATGTTCATGTGTCTTTTATATGCTGAAACATGTATCATTACACTTTATGGTN
TTCTCTTTTTTTTTTTTTTGTGTTGAGCTGTGCATGAGGGCTTGAAGCTTCCCTGGTATACGTTACTGTTGCGTGTCTAT
GGCAGTACCATTTAAACGCTATGCTTTGATGTAGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis