Browse Element(s) Details


Os.16763.1.S1_at

Description gb:AK105386.1
DB_XREF= gi:32990595
TID=Os.16763.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H02, full insert sequence.
FL= gb:AK122093.1 gb:AK105386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g059503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05940Os.50053.1.A1_at11/117+2868986..2871132viviparous-14, putative, expressed
LOC_Os07g05950Os.16763.1.S1_at3/117+2880672..2880902expressed protein
LOC_Os07g05960OsAffx.5226.1.S1_at11/117+2881339..2890947expressed protein
LOC_Os07g05970NANA7+2893654..2894428hypothetical protein
LOC_Os07g05984Os.46862.1.S1_at5/117+2897479..2899499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06000OsAffx.20329.1.S1_at6/117+2900246..2903204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06010NANA7+2905648..2906989transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16763.1.S1_at--393--5751Chr07:2880630..2880654 (25 bp)
GACGGAGAAGAAGCCAGCTGTCGCC
NONE
Os.16763.1.S1_at--302--7311Chr07:2880714..2880738 (25 bp)
GTGCTGGGCTGGATCACCATCGAGA
LOC_Os07g05950
Os.16763.1.S1_at--1034--3891Chr07:2880717..2880741 (25 bp)
CTGGGCTGGATCACCATCGAGATGG
LOC_Os07g05950
Os.16763.1.S1_at--390--6031Chr07:2880735..2880759 (25 bp)
GAGATGGCCTGCAAGCCCTGCCTCG
LOC_Os07g05950
Os.16763.1.S1_at--1100--6291Chr07:2881023..2881047 (25 bp)
GATGAGATGTTATCTTGGCAATCTA
NONE
Os.16763.1.S1_at--13--431Chr07:2881034..2881058 (25 bp)
ATCTTGGCAATCTATAATACAGTTA
NONE
Os.16763.1.S1_at--839--10771Chr07:2881082..2881106 (25 bp)
TTGATGTTTCTCTGCAACGAGTGAG
NONE
Os.16763.1.S1_at--598--5151Chr07:2881095..2881119 (25 bp)
GCAACGAGTGAGACTGTGACCTTCA
NONE
Os.16763.1.S1_at--48--7391Chr07:2881102..2881126 (25 bp)
GTGAGACTGTGACCTTCATTTCCAC
NONE
Os.16763.1.S1_at--485--5731Chr07:2881166..2881190 (25 bp)
GACTGATCCATCTCAATTTCCTATG
NONE
Os.16763.1.S1_at--311--9231Chr07:2881172..2881196 (25 bp)
TCCATCTCAATTTCCTATGGGAGGG
NONE
Target Sequence 
GACGGAGAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGNCGGTGATAGCCATCGCGGC
GGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCC
TCGACCCCAACTACGACCCCGACGAGCCCACCGCCGCCGGCGCCGCCGCCAACGAGCCTCTCCTCGCGGACCTCTCCGCC
GCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTC
TTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGA
TGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACT
GTGACCTTCATTTCCACNATCTGAGATATTTCTGTTCTGTNATCTGTACNATTTGAGACTGATCCATCTCAATTTCCTAT
GGGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis