Browse Element(s) Details


Os.16784.1.S1_at

Description gb:AK063715.1
DB_XREF= gi:32973733
TID=Os.16784.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C04, full insert sequence.
FL= gb:AK063715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0342011/11ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g031108/11ZF-HD protein dimerisation region containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03420Os.16784.1.S1_at11/1111+1297251..1297987ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g03430Os.54171.1.S1_at11/1111+1305317..1307674CDC45-like protein, expressed
LOC_Os11g03440Os.3389.2.S1_at4/1111+1316545..1317682Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16784.1.S1_at--1025--1771Chr11:1297584..1297608 (25 bp)
ACCGGAGCTTCCACAGGCGAGAGGT
LOC_Os11g03420
Os.16784.1.S1_at--377--3972Chr12:1179774..1179798 (25 bp)
CGGTGATCGCCGTGGATTTGATTCG
LOC_Os12g03110
Os.16784.1.S1_at--795--3992Chr12:1179784..1179808 (25 bp)
CGTGGATTTGATTCGGCCTCGTCGT
LOC_Os12g03110
Os.16784.1.S1_at--304--3792Chr12:1179801..1179825 (25 bp)
CTCGTCGTGCGAGTAGATCAGCATC
LOC_Os12g03110
Os.16784.1.S1_at--13--4631Chr11:1297702..1297726 (25 bp)
GCGAGTAGATCAGCATCATCAGCAG
LOC_Os11g03420
Os.16784.1.S1_at--560--4971Chr11:1297714..1297738 (25 bp)
GCATCATCAGCAGGTAAGGTGGTAT
LOC_Os11g03420
Os.16784.1.S1_at--994--10852Chr12:1179853..1179877 (25 bp)
TTGGCATTCAAAGGATTCGGTGGAT
LOC_Os12g03110
Os.16784.1.S1_at--109--672Chr12:1179880..1179904 (25 bp)
ATGAATCTGATTGTGTATGAACCGA
LOC_Os12g03110
Os.16784.1.S1_at--934--4632Chr12:1180006..1180030 (25 bp)
GCGTTCATGTAACTGCTGTGTCCAT
LOC_Os12g03110
Os.16784.1.S1_at--904--7052Chr12:1180014..1180038 (25 bp)
GTAACTGCTGTGTCCATGTACAGAT
LOC_Os12g03110
Os.16784.1.S1_at--297--7272Chr12:1180025..1180049 (25 bp)
GTCCATGTACAGATTATATTCAGAT
LOC_Os12g03110
Target Sequence 
ACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGC
CGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCG
ATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCT
TTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTT
CATGTAACTGCTGTGTCCATGTACAGATTATATTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis