Browse Element(s) Details


Os.54171.1.S1_at

Description gb:AK102291.1
DB_XREF= gi:32987500
TID=Os.54171.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089K18, full insert sequence.
FL= gb:AK102291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0343011/11CDC45-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03420Os.16784.1.S1_at11/1111+1297251..1297987ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g03430Os.54171.1.S1_at11/1111+1305317..1307674CDC45-like protein, expressed
LOC_Os11g03440Os.3389.2.S1_at4/1111+1316545..1317682Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g03450Os.53881.1.S1_s_at1/1111+1323620..1324078hypothetical protein
LOC_Os11g03460Os.28138.1.S1_at1/1111+1325006..1327927expressed protein
LOC_Os11g03470Os.9497.1.S1_at10/1111+1328443..1332416homoserine dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006279biological_processpremeiotic DNA synthesis
GO:0048229biological_processgametophyte development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54171.1.S1_at--1015--4831Chr11:1307202..1307226 (25 bp)
GCTAATGATTCTTTTCAGTCCCCAA
LOC_Os11g03430
Os.54171.1.S1_at--1158--5911Chr11:1307236..1307260 (25 bp)
GAGCTTGAAGCTGGATTCTCTCCCA
LOC_Os11g03430
Os.54171.1.S1_at--576--7931Chr11:1307248..1307272 (25 bp)
GGATTCTCTCCCAAACTCTAAATAA
LOC_Os11g03430
Os.54171.1.S1_at--591--8011Chr11:1307291..1307315 (25 bp)
GGAGTGATCGTTCATGGCATGCTCT
LOC_Os11g03430
Os.54171.1.S1_at--1015--4791Chr11:1307311..1307335 (25 bp)
GCTCTATTTTTTCTGCTACCACATG
LOC_Os11g03430
Os.54171.1.S1_at--1059--10011Chr11:1307355..1307379 (25 bp)
TAGCAGCCGGGCAATGGCAAGCATT
LOC_Os11g03430
Os.54171.1.S1_at--1157--2811Chr11:1307392..1307416 (25 bp)
AAGTCTAGTAGTTCAACGGCTGAGT
LOC_Os11g03430
Os.54171.1.S1_at--827--10671Chr11:1307447..1307471 (25 bp)
TTCCTCACTGTAACTGCTCCATTAT
LOC_Os11g03430
Os.54171.1.S1_at--308--5631Chr11:1307498..1307522 (25 bp)
GACACAAACCTGATTCTGACACACA
LOC_Os11g03430
Os.54171.1.S1_at--353--9071Chr11:1307539..1307563 (25 bp)
TGCTTGCTGATTTTCTTTACTACTA
LOC_Os11g03430
Os.54171.1.S1_at--82--4971Chr11:1307592..1307616 (25 bp)
GCATAAGCTTGCAATTTCTGTTGTA
LOC_Os11g03430
Target Sequence 
GCTAATGATTCTTTTCAGTCCCCAAAGAAGATGGGAGCTTGAAGCTGGATTCTCTCCCAAACTCTAAATAAAGGAGCTTG
AGGGCTGGTGGAGTGATCGTTCATGGCATGCTCTATTTTTTCTGCTACCACATGATCTTCACTAAGTTAGAGATAGCAGC
CGGGCAATGGCAAGCATTGCTTGATTTTCAAAGTCTAGTAGTTCAACGGCTGAGTTTTATACTATGTTATTGAAGGGAAG
ATTGTTTCCTCACTGTAACTGCTCCATTATTAGAAAATGATAGATCAATAGATTCAGACACAAACCTGATTCTGACACAC
AAGGGGCAAGGTATATTTGCTTGCTGATTTTCTTTACTACTAGATGAGCTTGATGTTTGTATTTGTATTCGCATAAGCTT
GCAATTTCTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis