Browse Element(s) Details


Os.16805.1.S1_x_at

Description gb:AK107721.1
DB_XREF= gi:32992930
TID=Os.16805.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E09, full insert sequence.
FL= gb:AK107721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g548001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein
LOC_Os01g54810Os.23671.1.S1_at11/111+31850897..31853962expressed protein
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16805.1.S1_x_at--310--2191Chr05:25506576..25506600 (25 bp)
ACACATCTCTCGATCGCTTGGACGA
NONE
Os.16805.1.S1_x_at--603--9491Chr05:25506569..25506593 (25 bp)
TCTCGATCGCTTGGACGAGGCAGCG
NONE
Os.16805.1.S1_x_at--962--1631Chr05:25506544..25506568 (25 bp)
AGCGAGCCATGGAGACCGAGCCGTC
NONE
Os.16805.1.S1_x_at--237--4091Chr05:25506520..25506544 (25 bp)
CGACGCCGATGACGCAGTCGTCCTA
NONE
Os.16805.1.S1_x_at--148--1371Chr05:25506346..25506370 (25 bp)
AGAGCAGGAGCTTCTGCAGCCTCGG
NONE
Os.16805.1.S1_x_at--442--4412Chr01:31848403..31848427 (25 bp)
GCCAGCTACGCCAAGAACTTCGACG
LOC_Os01g54800
Os.16805.1.S1_x_at--549--3231Chr05:25506255..25506279 (25 bp)
CAAGAACTTCGACGACGGCCGACGC
NONE
Os.16805.1.S1_x_at--911--4471Chr05:25506198..25506222 (25 bp)
GCCGGTCGCCGGAGCTAGCTAGCTA
NONE
Os.16805.1.S1_x_at--275--4851Chr05:25506177..25506201 (25 bp)
GCTAGAGGGTTTCTTGATCTTTTCT
NONE
Os.16805.1.S1_x_at--798--10411Chr05:25506120..25506144 (25 bp)
TTATTTGGTGGTTCGCTTGTAGCTA
NONE
Os.16805.1.S1_x_at--193--10511Chr05:25506095..25506119 (25 bp)
TTAATTAGCTCTGTTCTTGAAATGG
NONE
Target Sequence 
ACACATCTCTCGATCGCTTGGACGAGGCAGCGAGCGAGCCATGGAGACCGAGCCGTCGACGCCGATGACGCAGTCGTCCT
ACTTCGCCGGCTGCATGGGCTCGCCGGCGTGGCTGCCGGCGGTGCAGAGGAGCCCCGCGCGGTTCCACCTCCTCTCGCGC
GACGCCGCCGCCGGCCGCGACGACGGCGGCCGGCGAGCGTGGAGCCGGCTGCTGAGGAGGCTGGTGCGGGAGAGCAGGAG
CTTCTGCAGCCTCGGCAGCAGGCACGGCGGCGCCATGGCCGCCGCCACCACCACCTTCCACTACGACGCCGCCAGCTACG
CCAAGAACTTCGACGACGGCCGACGCGCCCACTACGCCGCCTCCGCCCAAGCGCCGCCGCCGGTCGCCGGAGCTAGCTAG
CTAGAGGGTTTCTTGATCTTTTCTTTTCCTTTTTTTGTTTCTTTTTTCCTTCTTTTTTATTTGGTGGTTCGCTTGTAGCT
ANTTAATTAGCTCTGTTCTTGAAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16805.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis