Browse Element(s) Details


Os.16982.1.S1_at

Description gb:AK065999.1
DB_XREF= gi:32976017
TID=Os.16982.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046D21, full insert sequence.
FL= gb:AK065999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3385011/11UBA/TS-N domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33830NANA5+19870231..19870920Zinc finger, C3HC4 type family protein
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33850Os.16982.1.S1_at11/115+19885722..19890373UBA/TS-N domain containing protein, expressed
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed
LOC_Os05g33890Os.32863.1.S1_at11/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33890Os.25587.2.S1_at3/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33900OsAffx.4511.1.S1_s_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33900OsAffx.4511.1.S1_at11/115+19914384..19916416nodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16982.1.S1_at--475--5431Chr05:19886290..19886314 (25 bp)
GAACCTTGGTGGTCCAGGCATTGCT
LOC_Os05g33850
Os.16982.1.S1_at--708--51Chr05:19886062..19886086 (25 bp)
ATTGAACCGTGTTTGTGTATCCTCG
LOC_Os05g33850
Os.16982.1.S1_at--188--10831Chr05:19886050..19886074 (25 bp)
TTGTGTATCCTCGACTGTTGGCCGA
LOC_Os05g33850
Os.16982.1.S1_at--600--6611Chr05:19886034..19886058 (25 bp)
GTTGGCCGAGATTAGTCATCTTTCT
LOC_Os05g33850
Os.16982.1.S1_at--336--7131Chr05:19886020..19886044 (25 bp)
GTCATCTTTCTGTGTATGCTGTGCA
LOC_Os05g33850
Os.16982.1.S1_at--416--6731Chr05:19885914..19885938 (25 bp)
GTTCTTTGGTGATCTGTTGCTTTAC
LOC_Os05g33850
Os.16982.1.S1_at--905--9071Chr05:19885897..19885921 (25 bp)
TGCTTTACTTGTTCTGTCTTGCGAA
LOC_Os05g33850
Os.16982.1.S1_at--898--5331Chr05:19885822..19885846 (25 bp)
GAAGTACTCCTATGTGTTTGTTTTT
LOC_Os05g33850
Os.16982.1.S1_at--614--6411Chr05:19885787..19885811 (25 bp)
GATCTTTTGCTTCTACCACTAGGTA
LOC_Os05g33850
Os.16982.1.S1_at--575--10451Chr05:19885749..19885773 (25 bp)
TTAGATGGCTTCATGACTCTCTCTT
LOC_Os05g33850
Os.16982.1.S1_at--618--5711Chr05:19885735..19885759 (25 bp)
GACTCTCTCTTTGTTTTACATCATT
LOC_Os05g33850
Target Sequence 
GAACCTTGGTGGTCCAGGCATTGCTGGGTTACATGAAAGCNATTTTCCNATGGATCCTTCTCCATCACCCCGACCCTATG
ATTGNCCTTCTTTCTGCANGGGGAGGATCTTCCTAGTTTCCCCTACCCTGTAGGTAAGAAGCCANTCGAATAAAACNAAG
TAAAAGATGTTATTTGTTTCTGTTCTTGTTTTGGTCTCAGATCCNAGTTGGTTGACANAGTTTTACATGTGTATTGAACC
GTGTTTGTGTATCCTCGACTGTTGGCCGAGATTAGTCATCTTTCTGTGTATGCTGTGCATGAAAAATGAAGGAAGAAATT
GAAGATATCTTGGCTTAAAAACGGACGCCCCTATCTCTCTGAACAAATAGCTCACCAATTGTTCTTTGGTGATCTGTTGC
TTTACTTGTTCTGTCTTGCGAATGCTGTTTTTTTTTGGGGGGGTGGGGCTGAGGGAGGGGGTTCATTCCAATGAAGTACT
CCTATGTGTTTGTTTTTGGGGCTAACGGATCTTTTGCTTCTACCACTAGGTAATTCAAATATTGTTTAGATGGCTTCATG
ACTCTCTCTTTGTTTTACATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis