Browse Element(s) Details


Os.17023.1.S1_a_at

Description gb:AK069469.1
DB_XREF= gi:32979493
TID=Os.17023.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022D04, full insert sequence.
FL= gb:AK069469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57390OsAffx.3632.1.S1_at11/113+32670353..32670634hypothetical protein
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g57420Os.9341.1.S1_at11/113+32678700..32681277ML domain protein, putative, expressed
LOC_Os03g57430Os.17023.1.S1_a_at11/113+32683646..32689998expressed protein
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57470NANA3+32702094..32705234retrotransposon protein, putative, unclassified
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17023.1.S1_a_at--412--3811Chr03:32689422..32689446 (25 bp)
CTGCCGGTGGTAGCCTAGAGTTTCA
LOC_Os03g57430
Os.17023.1.S1_a_at--200--6831Chr03:32689441..32689465 (25 bp)
GTTTCAGGGTGGGAACTTCTCTTTG
LOC_Os03g57430
Os.17023.1.S1_a_at--318--2771Chr03:32689539..32689563 (25 bp)
AAGACGCTCTGTTCAAATGTGCATT
LOC_Os03g57430
Os.17023.1.S1_a_at--363--9491Chr03:32689582..32689606 (25 bp)
TCTGCCTGGCAACATGTCGTGATCA
LOC_Os03g57430
Os.17023.1.S1_a_at--904--9651Chr03:32689607..32689631 (25 bp)
TCAGAGCGGGACTACGACCATGGTT
LOC_Os03g57430
Os.17023.1.S1_a_at--475--2251Chr03:32689645..32689669 (25 bp)
AAATTTTCCAGCGTCAGCACAGTTT
LOC_Os03g57430
Os.17023.1.S1_a_at--694--7111Chr03:32689657..32689681 (25 bp)
GTCAGCACAGTTTTCGCAGCATCAC
LOC_Os03g57430
Os.17023.1.S1_a_at--768--1531Chr03:32689674..32689698 (25 bp)
AGCATCACCCGGCTGGCTTGTAAAC
LOC_Os03g57430
Os.17023.1.S1_a_at--1009--3511Chr03:32689757..32689781 (25 bp)
CATGTTGTTGTATGCCTGTGCTATT
LOC_Os03g57430
Os.17023.1.S1_a_at--1006--8731Chr03:32689821..32689845 (25 bp)
TGTAATTTTGTTCTCTTTTCCCTGC
LOC_Os03g57430
Os.17023.1.S1_a_at--871--4731Chr03:32689852..32689876 (25 bp)
GCTGTCTTATTTGCCTCCGATATAT
LOC_Os03g57430
Target Sequence 
CTGCCGGTGGTAGCCTAGAGTTTCAGGGTGGGAACTTCTCTTTGGGAAGTGGTGGCGGAGGCGGCGACAAATCTAGCAGA
AGGGTGATCAAGGTCAAAAGGAACCCAAAGAAAAGATAAGACGCTCTGTTCAAATGTGCATTTCATGGTGCCATTTTGGA
TCTGCCTGGCAACATGTCGTGATCATCAGAGCGGGACTACGACCATGGTTCGTATGGTCATACAAATTTTCCAGCGTCAG
CACAGTTTTCGCAGCATCACCCGGCTGGCTTGTAAACCCCAAGGTCAGTAGTGTATTACCACTCAATTATTCCTTTCATT
GGCAAAGCCGGATTGCATGTTGTTGTATGCCTGTGCTATTGGAGTGTAAAATAGAACAAAAAAGAAGTGTATCCCGAGGT
GTAATTTTGTTCTCTTTTCCCTGCGCATCTGCTGTCTTATTTGCCTCCGATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17023.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis