Browse Element(s) Details


Os.22627.1.S1_at

Description gb:AK069046.1
DB_XREF= gi:32979070
TID=Os.22627.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009K09, full insert sequence.
FL= gb:AK106114.1 gb:AK069046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5746010/11beta-Ig-H3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g57420Os.9341.1.S1_at11/113+32678700..32681277ML domain protein, putative, expressed
LOC_Os03g57430Os.17023.1.S1_a_at11/113+32683646..32689998expressed protein
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57470NANA3+32702094..32705234retrotransposon protein, putative, unclassified
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007155biological_processcell adhesion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22627.1.S1_at--245--3951Chr03:32698084..32698108 (25 bp)
CGGACATCTACACGGATGGCAGGAT
LOC_Os03g57460
Os.22627.1.S1_at--1136--6671Chr03:32698032..32698056 (25 bp)
GTTCCCGCCGGATGACACCAAGACG
LOC_Os03g57460
Os.22627.1.S1_at--294--7111Chr03:32697971..32697995 (25 bp)
GTCACCGGCACTCGCAAGAAGAACA
LOC_Os03g57460
Os.22627.1.S1_at--446--3231NONE
CAAACTCCGGAGAGGCAAGTTGTTA
NONE
Os.22627.1.S1_at--943--2571Chr03:32696350..32696374 (25 bp)
AACGTGCCAAATGGCTGGCATCCTT
LOC_Os03g57460
Os.22627.1.S1_at--998--4971Chr03:32696333..32696357 (25 bp)
GCATCCTTGGTCAGCGATTGCGATT
LOC_Os03g57460
Os.22627.1.S1_at--1083--10691Chr03:32696316..32696340 (25 bp)
TTGCGATTCGCAAGCTGCCAGTAGA
LOC_Os03g57460
Os.22627.1.S1_at--172--851Chr03:32696242..32696266 (25 bp)
ATGGACTGTGCTGGAGCCGTCCACA
LOC_Os03g57460
Os.22627.1.S1_at--720--4491Chr03:32696227..32696251 (25 bp)
GCCGTCCACATTACCATTTGTTTTT
LOC_Os03g57460
Os.22627.1.S1_at--405--491Chr03:32696148..32696172 (25 bp)
ATCTGGTGGCTGTTGGTGTCTGAAA
LOC_Os03g57460
Os.22627.1.S1_at--356--5371Chr03:32696094..32696118 (25 bp)
GAAGACCGAGATCTTCTGTGTATAG
LOC_Os03g57460
Target Sequence 
CGGACATCTACACGGATGGCAGGATCGCAGTGCAGGGCATTGACGCCGTGCTGTTCCCGCCGGATGACACCAAGACGGCG
CCGGACACGGCGCCGGTCAGGAGGGCGCCCGCCGTCACCGGCACTCGCAAGAAGAACAAACTCCGGAGAGGCAAGTTGTT
AGAAGCAACGTGCCAAATGGCTGGCATCCTTGGTCAGCGATTGCGATTCGCAAGCTGCCAGTAGACGGCGAAAGATTGAT
CTCATGATACCGAAACACGAACTAGAATGAGGTGATGGACTGTGCTGGAGCCGTCCACATTACCATTTGTTTTTTTTTAT
TTTTATTTTTGTTTATTATTACGAATAATAAATCAGGTGGGGAATGTAATCTGGTGGCTGTTGGTGTCTGAAAAAAAAAA
AGGCAGGAAAATGTTCATACTTGAAGACCGAGATCTTCTGTGTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis