Browse Element(s) Details


Os.17090.1.S1_at

Description gb:AK073539.1
DB_XREF= gi:32983562
TID=Os.17090.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAC domain protein (OSJNBa0070N04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041C24, full insert sequence.
FL= gb:AK073539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5658011/11NAC-domain containing protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17090.1.S1_at--874--4411Chr03:32174939..32174963 (25 bp)
GCCACCACAAGCTTCATAGTCAATG
LOC_Os03g56580
Os.17090.1.S1_at--728--5871Chr03:32175001..32175025 (25 bp)
GAGCCGGAGCAGAAGCCTCTGAGCT
LOC_Os03g56580
Os.17090.1.S1_at--139--1451Chr03:32175011..32175035 (25 bp)
AGAAGCCTCTGAGCTCGCCGGCGAT
LOC_Os03g56580
Os.17090.1.S1_at--1144--8931Chr03:32175035..32175059 (25 bp)
TGACGATCGCCTTCCATCAAAACGA
LOC_Os03g56580
Os.17090.1.S1_at--438--8331Chr03:32175135..32175159 (25 bp)
GGCTGATCCAAGTCCAACAGGATTC
LOC_Os03g56580
Os.17090.1.S1_at--1103--1251Chr03:32175209..32175233 (25 bp)
AGATATGCAGAATTCGCCGACAAGA
LOC_Os03g56580
Os.17090.1.S1_at--580--6211Chr03:32175282..32175306 (25 bp)
GAGGCTGCTATCACTATTAGTCTTG
LOC_Os03g56580
Os.17090.1.S1_at--822--7011Chr03:32175306..32175330 (25 bp)
GTACTTTTGTTTTCTGATCTAATAT
LOC_Os03g56580
Os.17090.1.S1_at--1045--3731Chr03:32175324..32175348 (25 bp)
CTAATATATACACTCCAGATGGGAT
LOC_Os03g56580
Os.17090.1.S1_at--637--3811Chr03:32175336..32175360 (25 bp)
CTCCAGATGGGATGTGAACTGTCAT
LOC_Os03g56580
Os.17090.1.S1_at--1025--5451Chr03:32175351..32175375 (25 bp)
GAACTGTCATACAAGATACCTGATT
LOC_Os03g56580
Target Sequence 
GCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCT
CTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGA
TGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGAT
CAGTAGGAACAGGGTTTCAGAATAGATGCTAGATATGCAGAATTCGCCGACAAGAACAGTGCCCCCTTTGTGTGAGAGGC
TGACATGTAGGGCCCATGCTGCAGAGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTC
CAGATGGGATGTGAACTGTCATACAAGATACCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis