Browse Element(s) Details


Os.17123.1.S1_at

Description gb:AK061852.1
DB_XREF= gi:32971870
TID=Os.17123.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence.
FL= gb:AK061852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3047811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478Os.17123.1.S1_at11/119+18575971..18580276expressed protein
LOC_Os09g30482Os.39431.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.39431.1.S1_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482OsAffx.22452.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_at1/119+18601643..18603341transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17123.1.S1_at--768--3231Chr09:18579657..18579681 (25 bp)
CAAGCTCACAGAGTTGGCTCAGTCT
LOC_Os09g30478
Os.17123.1.S1_at--718--8291Chr09:18579793..18579817 (25 bp)
GGCTTGAATCTGTTCTGGAGAGCAG
LOC_Os09g30478
Os.17123.1.S1_at--1095--5491Chr09:18579884..18579908 (25 bp)
GAAAACGGTCGATGGGCCTGTGAAA
LOC_Os09g30478
Os.17123.1.S1_at--93--5131Chr09:18579920..18579944 (25 bp)
GCACAGGTGTAGCAGAATCTCATTT
LOC_Os09g30478
Os.17123.1.S1_at--525--3051Chr09:18579935..18579959 (25 bp)
AATCTCATTTCGGAAGGAAGGCCTC
LOC_Os09g30478
Os.17123.1.S1_at--190--8211Chr09:18579950..18579974 (25 bp)
GGAAGGCCTCGCTTTGTGATCAAAG
LOC_Os09g30478
Os.17123.1.S1_at--1083--2711Chr09:18579972..18579996 (25 bp)
AAGCAAAGCGATCGTAACCAGCCCG
LOC_Os09g30478
Os.17123.1.S1_at--124--9351Chr09:18580000..18580024 (25 bp)
TCGCGATGTACATTGTCTGCCTGAT
LOC_Os09g30478
Os.17123.1.S1_at--1077--2611Chr09:18580057..18580081 (25 bp)
AACCTGTACCTGGAGTTATTTTGAG
LOC_Os09g30478
Os.17123.1.S1_at--147--6931Chr09:18580116..18580140 (25 bp)
GTATGTGGTTCAATCCACGTACGCT
LOC_Os09g30478
Os.17123.1.S1_at--1136--3011Chr09:18580127..18580151 (25 bp)
AATCCACGTACGCTCTTTTTCTTGG
LOC_Os09g30478
Target Sequence 
CAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAA
AGGCANATCGACTCCAAACAAAATACCACCNGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGA
AAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGT
AACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACC
TGGAGTTATTTTGAGTAGGCANGGTTGATGCACTATTNTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTT
TCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis