Browse Element(s) Details


Os.17143.1.S1_at

Description gb:AK067723.1
DB_XREF= gi:32977741
TID=Os.17143.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase (OSJNBa0010K01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116J03, full insert sequence.
FL= gb:AK122130.1 gb:AK067723.1 gb:AK070058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1380011/11Receptor-like protein kinase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13760Os.1233.1.S1_at11/111+7709161..7714533DnaJ domain containing protein, expressed
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17143.1.S1_at--1149--3091Chr01:7739163..7739187 (25 bp)
AATAGCTGCTTCCATGAATCTTCTC
LOC_Os01g13800
Os.17143.1.S1_at--363--5251Chr01:7739178..7739202 (25 bp)
GAATCTTCTCCCATGGCTTGTAGAG
LOC_Os01g13800
Os.17143.1.S1_at--494--3071Chr01:7739226..7739250 (25 bp)
AATCATAACCCAGTCGTGTCCAAAA
LOC_Os01g13800
Os.17143.1.S1_at--885--10391Chr01:7739266..7739290 (25 bp)
TTTTGAGCGCTGAATTTGCTCGCCG
LOC_Os01g13800
Os.17143.1.S1_at--10--4111Chr01:7739305..7739329 (25 bp)
CGACAGCACGGTTAACTCTGGAGCT
LOC_Os01g13800
Os.17143.1.S1_at--827--3611Chr01:7739382..7739406 (25 bp)
CTTGGTTGTCCTTGCTGTATGTGGA
LOC_Os01g13800
Os.17143.1.S1_at--209--10111Chr01:7739399..7739423 (25 bp)
TATGTGGACCGTGCCATTGATGCCG
LOC_Os01g13800
Os.17143.1.S1_at--353--9411Chr01:7739438..7739462 (25 bp)
TCGTCTGCTGTCCATCGAGAGAAGA
LOC_Os01g13800
Os.17143.1.S1_at--935--9891Chr01:7739512..7739536 (25 bp)
TACTTTGCCTTTTCTCCTGAGATAA
LOC_Os01g13800
Os.17143.1.S1_at--736--6751Chr01:7739549..7739573 (25 bp)
GTTCAAGGCTCATGGTGATGGCCCA
LOC_Os01g13800
Os.17143.1.S1_at--926--7951Chr01:7739584..7739608 (25 bp)
GGATCAAGTATTTCCTGCTCTTCAA
LOC_Os01g13800
Target Sequence 
AATAGCTGCTTCCATGAATCTTCTCCCATGGCTTGTAGAGCTGTAGCTAGGTAGGAAAGCTGCAATCATAACCCAGTCGT
GTCCAAAATTCTATAGTTGCTGATTTTGAGCGCTGAATTTGCTCGCCGCCGACGCCGGCCTCCGACAGCACGGTTAACTC
TGGAGCTGTGCNCTCCAGTCCGGCAATGGAGGACAGTAAGCTGGTGGGTGCCCGGTGTTCTTGGTTGTCCTTGCTGTATG
TGGACCGTGCCATTGATGCCGGTAGGGCAGATCGCTCGTCTGCTGTCCATCGAGAGAAGAAAAGTCTGTGANCGGAATCA
AATGTAGGTGTGTACTGTAATTAGTACTGCTACTTTGCCTTTTCTCCTGAGATAAGCTAGGAGTATTGTTCAAGGCTCAT
GGTGATGGCCCANGGGGTGGTTGGATCAAGTATTTCCTGCTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis