Browse Element(s) Details


Os.17173.1.S1_at

Description gb:AK100028.1
DB_XREF= gi:32985237
TID=Os.17173.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full insert sequence.
FL= gb:AK100028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0864010/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein
LOC_Os05g08640Os.17173.1.S1_at10/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08640OsAffx.9719.1.S1_x_at2/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08650OsAffx.25367.1.S1_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08650Os.19099.1.S1_x_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.46314.1.S1_x_at6/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.19099.1.S1_x_at2/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08670OsAffx.1319.1.S1_at9/115+4728055..4730970transposon protein, putative, Mariner sub-class
LOC_Os05g08680NANA5+4731665..4732777S-antigen protein precursor, putative
LOC_Os05g08694NANA5+4734726..4742748retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17173.1.S1_at--504--5811Chr05:4713567..4713591 (25 bp)
GACGCCATGGTGGACATCAACTAAT
LOC_Os05g08640
Os.17173.1.S1_at--944--9971Chr05:4713448..4713472 (25 bp)
TACCACTACTTCCTTATAATTAATT
LOC_Os05g08640
Os.17173.1.S1_at--621--1311NONE
AGATGGTAGTTGTTGTTGGCATTAT
NONE
Os.17173.1.S1_at--869--7671Chr05:4713297..4713321 (25 bp)
GGGATTGGTATTGGATTCCTTTGGT
LOC_Os05g08640
Os.17173.1.S1_at--1106--6551Chr05:4713284..4713308 (25 bp)
GATTCCTTTGGTGTTGTTTGGTCAA
LOC_Os05g08640
Os.17173.1.S1_at--1004--10171Chr05:4713268..4713292 (25 bp)
TTTGGTCAAGTGTATACTGGAGAAC
LOC_Os05g08640
Os.17173.1.S1_at--167--331Chr05:4713255..4713279 (25 bp)
ATACTGGAGAACAGCTACTACATGC
LOC_Os05g08640
Os.17173.1.S1_at--167--2351Chr05:4713190..4713214 (25 bp)
AAAGCTGGAATTGGTGGGAAGCCAC
LOC_Os05g08640
Os.17173.1.S1_at--24--7611Chr05:4713175..4713199 (25 bp)
GGGAAGCCACCAACTAACCAGTATG
LOC_Os05g08640
Os.17173.1.S1_at--13--4211Chr05:4713148..4713172 (25 bp)
CCCCTTGATAAGTGTACCATATATT
LOC_Os05g08640
Os.17173.1.S1_at--1079--8211Chr05:4713080..4713104 (25 bp)
GGCAAGGTGTACAGCCTCTTTAGTT
LOC_Os05g08640
Target Sequence 
GACGCCATGGTGGACATCAACTAATTTATTATTATAATTATAATTATTATTATTATTATTATTCCCTTTTCTTTTTATTT
TATTTNTTTTACCACGCCACCTTTTTCACTTTGTTTTTTTACCACTACTTCCTTATAATTAATTAATTAATTAATTAGAT
ATTAATAATGAAGAATTAAGGGTAAAAAAAGGAGAGGATAAAGAAAGGTGAAAAGTACATATTGATATTGAGGGTACAGG
TAGATGGTAGTTGTTGTTGGCATTATTAGTGGGATTGGTATTGGATTCCTTTGGTGTTGTTTGGTCAAGTGTATACTGGA
GAACAGCTACTACATGCTGGGTATTCCTTTTNTTTTTTTTTNCTTTTTTTTGGGATCAAAAGCTGGAATTGGTGGGAAGC
CACCAACTAACCAGTATGTCCCCCTTGATAAGTGTACCATATATTGTATTCAATTTTTATCTTATTTTCAGAATGGTATA
TATAAGCTGGCAAGGTGTACAGCCTCTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis