Browse Element(s) Details


Os.17323.1.S1_x_at

Description gb:AK111115.1
DB_XREF= gi:32996324
TID=Os.17323.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B06, full insert sequence.
FL= gb:AK111115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48170OsAffx.24778.1.S1_s_at11/112+29475597..29476731expressed protein
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005773cellular_componentvacuole
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17323.1.S1_x_at--73--9391Chr02:29500588..29500612 (25 bp)
TCGATCGATCGCTGGATTGAGGGTT
LOC_Os02g48190
Os.17323.1.S1_x_at--987--6571Chr02:29500574..29500598 (25 bp)
GATTGAGGGTTCAGTTCACGCGCGA
LOC_Os02g48190
Os.17323.1.S1_x_at--1063--7671Chr02:29500568..29500592 (25 bp)
GGGTTCAGTTCACGCGCGACACCAG
LOC_Os02g48190
Os.17323.1.S1_x_at--254--9291Chr02:29500478..29500502 (25 bp)
TCCGCGCCCCTCTTGAGGCGTGATA
LOC_Os02g48190
Os.17323.1.S1_x_at--523--6211Chr02:29500464..29500488 (25 bp)
GAGGCGTGATACCTTGGCCTTCTCT
LOC_Os02g48190
Os.17323.1.S1_x_at--495--9331Chr02:29500424..29500448 (25 bp)
TCGCCACGCGGTTCGTCGTGCTGCT
LOC_Os02g48190
Os.17323.1.S1_x_at--1036--10611Chr02:29500301..29500325 (25 bp)
TTCGTCCCGTGCGTCGACATCAAGT
LOC_Os02g48190
Os.17323.1.S1_x_at--545--5671Chr02:29500286..29500310 (25 bp)
GACATCAAGTCGTTCGTGCTCTCGC
LOC_Os02g48190
Os.17323.1.S1_x_at--936--10671Chr02:29500256..29500280 (25 bp)
TTCCTCACGGTGTTCGTCGCATTGT
LOC_Os02g48190
Os.17323.1.S1_x_at--807--8792Chr06:29024458..29024482 (25 bp)
TGTTCGTCGCATTGTGGCAGCTCCA
NONE
Os.17323.1.S1_x_at--380--31Chr02:29500236..29500260 (25 bp)
ATTGTGGCAGCTCCAGCCGTACGGC
LOC_Os02g48190
Target Sequence 
TCGATCGATCGCTGGATTGAGGGTTCAGTTCACGCGCGACACCAGCAGCCTGCCTCATCACCTTCCGCTCCCGTCCCCTT
CCGCCTCTCGCATCATCGCCTTCTACATTCTCCGCGCCCCTCTTGAGGCGTGATACCTTGGCCTTCTCTGCCCGCCGATC
TGCCTCGCCACGCGGTTCGTCGTGCTGCTGCGGGGCGGCGTCCGGCGGAGAGGGGGCGCGCGGCGGGGTGTAGGTAGCTA
TGAAGAACGGGGCGAGGAAAGACGCGGGCGGCGGCGGCGGCGGAGTGTTCGTCCCGTGCGTCGACATCAAGTCGTTCGTG
CTCTCGCTCGCCTTCCTCACGGTGTTCGTCGCATTGTGGCAGCTCCAGCCGTACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17323.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis