Browse Element(s) Details


OsAffx.12547.1.S1_at

Description tigr:9630.m04699
TID=OsAffx.12547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4821011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12547.1.S1_at--648--5051Chr02:29514138..29514162 (25 bp)
GCAGCACGGTGATGAACTCGTCGTC
LOC_Os02g48210
OsAffx.12547.1.S1_at--33--9891Chr02:29514109..29514133 (25 bp)
TACTACGTGTCCTCGTCGGGTTGGA
LOC_Os02g48210
OsAffx.12547.1.S1_at--1129--9351Chr02:29514094..29514118 (25 bp)
TCGGGTTGGACCCAGAACTACCAGG
LOC_Os02g48210
OsAffx.12547.1.S1_at--510--1911Chr02:29514031..29514055 (25 bp)
ACGGTGTGACCGTAGACGAGTCCAC
LOC_Os02g48210
OsAffx.12547.1.S1_at--34--531Chr02:29513977..29514001 (25 bp)
ATCGCATCGGATTTGGCACGTTACC
LOC_Os02g48210
OsAffx.12547.1.S1_at--528--5091Chr02:29513962..29513986 (25 bp)
GCACGTTACCGTGGAGTTGGTGACA
LOC_Os02g48210
OsAffx.12547.1.S1_at--298--2991Chr02:29513898..29513922 (25 bp)
AATGTCCATGAATATGCTATCGAGC
LOC_Os02g48210
OsAffx.12547.1.S1_at--783--4871Chr02:29513883..29513907 (25 bp)
GCTATCGAGCTTTCCATTTGTTTTT
LOC_Os02g48210
OsAffx.12547.1.S1_at--174--8071Chr02:29513849..29513873 (25 bp)
GGAGCTTCTTTAGTACAGTGGAGTA
LOC_Os02g48210
OsAffx.12547.1.S1_at--213--5691Chr02:29513821..29513845 (25 bp)
GACTACTGGTGTTTAGATTTGTTTC
LOC_Os02g48210
OsAffx.12547.1.S1_at--803--6271Chr02:29513780..29513804 (25 bp)
GATGTCAAGCTGTAATGTTCTCAAT
LOC_Os02g48210
Target Sequence 
GCAGCACGGTGATGAACTCGTCGTCGTCGTACTACGTGTCCTCGTCGGGTTGGACCCAGAACTACCAGGTCAGCAAGGAG
CACGAGGTGGCGGACAGGGACGTGGCGACGGTGTGACCGTAGACGAGTCCACGGCCCACACGTGCGGCCGGGACCCGACC
CATCGCATCGGATTTGGCACGTTACCGTGGAGTTGGTGACAACGTTGAGAACAAAGATGGGACGGATGAAAGGTGTAAAT
AATGTCCATGAATATGCTATCGAGCTTTCCATTTGTTTTTTTTGCTCTGGGAGCTTCTTTAGTACAGTGGAGTACAAGAC
TACTGGTGTTTAGATTTGTTTCATTTTCTTCATACTTTGATGTCAAGCTGTAATGTTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis