Browse Element(s) Details


OsAffx.2997.1.S1_at

Description tigr:9630.m04705
TID=OsAffx.2997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lob domain protein 12. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4827011/11LOB domain protein 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed
LOC_Os02g48300OsAffx.24780.1.S1_at11/112+29549773..29551847F-box domain containing protein
LOC_Os02g48310NANA2+29556250..29559068hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2997.1.S1_at--820--4371Chr02:29539188..29539212 (25 bp)
CCAAATGCAGCACCGCGATGGCAAT
LOC_Os02g48270
OsAffx.2997.1.S1_at--601--3411Chr02:29539195..29539219 (25 bp)
CAGCACCGCGATGGCAATGAGAACA
LOC_Os02g48270
OsAffx.2997.1.S1_at--420--7711Chr02:29539463..29539487 (25 bp)
GGGTGTACTTTTTTCGCGAGTTGTG
LOC_Os02g48270
OsAffx.2997.1.S1_at--42--10371Chr02:29539471..29539495 (25 bp)
TTTTTTCGCGAGTTGTGGGCCCTCT
LOC_Os02g48270
OsAffx.2997.1.S1_at--638--10611Chr02:29539475..29539499 (25 bp)
TTCGCGAGTTGTGGGCCCTCTCGTA
LOC_Os02g48270
OsAffx.2997.1.S1_at--449--9511Chr02:29539493..29539517 (25 bp)
TCTCGTAGCGTTGCAGGCCAAGCTG
LOC_Os02g48270
OsAffx.2997.1.S1_at--183--4031Chr02:29539496..29539520 (25 bp)
CGTAGCGTTGCAGGCCAAGCTGAAC
LOC_Os02g48270
OsAffx.2997.1.S1_at--375--2691Chr02:29539512..29539536 (25 bp)
AAGCTGAACGTTTTGGTGGGCTCCA
LOC_Os02g48270
OsAffx.2997.1.S1_at--949--8951Chr02:29539516..29539540 (25 bp)
TGAACGTTTTGGTGGGCTCCAGTTT
LOC_Os02g48270
OsAffx.2997.1.S1_at--872--7251Chr02:29539529..29539553 (25 bp)
GGGCTCCAGTTTATAATGGGCCGTA
LOC_Os02g48270
OsAffx.2997.1.S1_at--188--4351Chr02:29539534..29539558 (25 bp)
CCAGTTTATAATGGGCCGTAATCAC
LOC_Os02g48270
Target Sequence 
CCAAATGCAGCACCGCGATGGCAATGAGAACAAGAAGAATTTGAGGGACCTTGGGTGTACTTTTTTCGCGAGTTGTGGGC
CCTCTCGTAGCGTTGCAGGCCAAGCTGAACGTTTTGGTGGGCTCCAGTTTATAATGGGCCGTAATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis