Browse Element(s) Details


OsAffx.26414.1.S1_at

Description tigr:9632.m03940
TID=OsAffx.26414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4136010/11hypothetical protein
LOC_Os02g482601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26414.1.S1_at--416--9511Chr04:24318102..24318126 (25 bp)
TCTCGTCTCTCGTGCCTGATGTTCA
LOC_Os04g41360
OsAffx.26414.1.S1_at--992--9171Chr04:24318090..24318114 (25 bp)
TGCCTGATGTTCAGATCGAGCCATC
LOC_Os04g41360
OsAffx.26414.1.S1_at--650--4271Chr04:24318088..24318112 (25 bp)
CCTGATGTTCAGATCGAGCCATCGA
LOC_Os04g41360
OsAffx.26414.1.S1_at--107--1331Chr04:24318064..24318088 (25 bp)
AGAGTGTTCGAGGAGAGAGTAAAAT
LOC_Os04g41360
OsAffx.26414.1.S1_at--21--2311NONE
AAATGGAAAAGATTGCGAATTTGCA
NONE
OsAffx.26414.1.S1_at--540--4371Chr04:24317497..24317521 (25 bp)
GCGAATTTGCAATATTAGACAGTAC
LOC_Os04g41360
OsAffx.26414.1.S1_at--875--5632Chr04:24317480..24317504 (25 bp)
GACAGTACAAGATTCGATACAAGTT
LOC_Os04g41360
OsAffx.26414.1.S1_at--509--2811Chr04:24317472..24317496 (25 bp)
AAGATTCGATACAAGTTCTGGCTCA
LOC_Os04g41360
OsAffx.26414.1.S1_at--170--1211Chr04:24317459..24317483 (25 bp)
AGTTCTGGCTCAGGTGGTCAGTTTT
LOC_Os04g41360
OsAffx.26414.1.S1_at--926--9451Chr04:24317456..24317480 (25 bp)
TCTGGCTCAGGTGGTCAGTTTTGAC
LOC_Os04g41360
OsAffx.26414.1.S1_at--747--3751Chr04:24317451..24317475 (25 bp)
CTCAGGTGGTCAGTTTTGACTATCA
LOC_Os04g41360
Target Sequence 
TCTCGTCTCTCGTGCCTGATGTTCAGATCGAGCCATCGAGAGTGTTCGAGGAGAGAGTAAAATGGAAAAGATTGCGAATT
TGCAATATTAGACAGTACAAGATTCGATACAAGTTCTGGCTCAGGTGGTCAGTTTTGACTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis