Browse Element(s) Details


Os.52747.1.S1_at

Description gb:AK069045.1
DB_XREF= gi:32979069
TID=Os.52747.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010C01, full insert sequence.
FL= gb:AK069045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4138010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52747.1.S1_at--129--6811Chr04:24325685..24325709 (25 bp)
GTTTTCCCCTTGTAGAATTGCCTCA
LOC_Os04g41380
Os.52747.1.S1_at--809--10691Chr04:24325702..24325726 (25 bp)
TTGCCTCACTGGGTTAGTCCTGAAA
LOC_Os04g41380
Os.52747.1.S1_at--910--2651NONE
AAGCTCTACGTCAGCGGAGGTAACA
NONE
Os.52747.1.S1_at--522--9271Chr04:24325792..24325816 (25 bp)
TCCTGGGAGGTGACTGTACTTCGGC
LOC_Os04g41380
Os.52747.1.S1_at--875--8731Chr04:24325806..24325830 (25 bp)
TGTACTTCGGCTAAGGTTCCTCAAA
LOC_Os04g41380
Os.52747.1.S1_at--843--5471Chr04:24325836..24325860 (25 bp)
GAACTATTCATGGACTGCCCTGCAT
LOC_Os04g41380
Os.52747.1.S1_at--794--771Chr04:24325899..24325923 (25 bp)
ATGTGAAAATCTACAGCCCTGGCCT
LOC_Os04g41380
Os.52747.1.S1_at--95--5451Chr04:24325951..24325975 (25 bp)
GAACCGAATGGAACGATTGCACCTG
LOC_Os04g41380
Os.52747.1.S1_at--1000--51Chr04:24325966..24325990 (25 bp)
ATTGCACCTGTGTTGACCTGAAGTA
LOC_Os04g41380
Os.52747.1.S1_at--1113--5191Chr04:24326110..24326134 (25 bp)
GCAATTGGCAATTGTCCTGCAGCAT
LOC_Os04g41380
Os.52747.1.S1_at--536--1491Chr04:24326174..24326198 (25 bp)
AGCACAAATCCTTGCATACTTTCAC
LOC_Os04g41380
Target Sequence 
GTTTTCCCCTTGTAGAATTGCCTCACTGGGTTAGTCCTGAAAAGCTGAGAAAATTGAAGAAGCTCTACGTCAGCGGAGGT
AACATCAGTGACCTGGGTGATTTGAAGTCCTGGGAGGTGACTGTACTTCGGCTAAGGTTCCTCAAACATATGAACTATTC
ATGGACTGCCCTGCATGATTCATTCAGGAAACTCGATGTTTTGGAGGCACATGAATGTGAAAATCTACAGCCCTGGCCTT
CCTGCGGAAAAGGGTTATGGCGGAAAGAACCGAATGGAACGATTGCACCTGTGTTGACCTGAAGTATTGAGCTGGGTCCA
ATAGGGTGCAGAATTACTGCCTGGAAATGGGAATATTGAAGGATATATTTGATCAGCAGTATATCTGAATTCTGAAGACA
TTGCCAATCACTGTCTGGTAAGATGGCAATTGGCAATTGTCCTGCAGCATATATAAAGATATTAAACTTCTAACTGTGTT
ACATTTCTAAGCACAAATCCTTGCATACTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis