Browse Element(s) Details


OsAffx.4049.1.S1_at

Description tigr:9632.m03941
TID=OsAffx.4049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4137011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4049.1.S1_at--195--8511Chr04:24319889..24319913 (25 bp)
TGGCACATTCGCCTCACTGGAGAAA
LOC_Os04g41370
OsAffx.4049.1.S1_at--7--8071Chr04:24319871..24319895 (25 bp)
GGAGAAACTCTCGTTCTTTCACATG
LOC_Os04g41370
OsAffx.4049.1.S1_at--818--5931Chr04:24319758..24319782 (25 bp)
GAGCAGTGCATGTGAAACTCCCAGT
LOC_Os04g41370
OsAffx.4049.1.S1_at--395--8071Chr04:24319681..24319705 (25 bp)
GGAGCACTGGAAGGTTTCTCTCAAA
LOC_Os04g41370
OsAffx.4049.1.S1_at--571--2271Chr04:24319651..24319675 (25 bp)
AAATCTCTGTCGGTTTCCCTGTGTG
LOC_Os04g41370
OsAffx.4049.1.S1_at--480--1471Chr04:24319547..24319571 (25 bp)
AGAATTGATTTCTTTGCCCCATGGC
LOC_Os04g41370
OsAffx.4049.1.S1_at--1139--8471Chr04:24319526..24319550 (25 bp)
TGGCATGCAGCATTTGTCATTCCTC
LOC_Os04g41370
OsAffx.4049.1.S1_at--155--91Chr04:24319508..24319532 (25 bp)
ATTCCTCCGAACCTTGACAATAACA
LOC_Os04g41370
OsAffx.4049.1.S1_at--436--1471Chr04:24319446..24319470 (25 bp)
AGAATTTCACCTCTCTGAGATCCTT
LOC_Os04g41370
OsAffx.4049.1.S1_at--1066--6351Chr04:24319428..24319452 (25 bp)
GATCCTTGCACATATCTAGTTGTCC
LOC_Os04g41370
OsAffx.4049.1.S1_at--633--2351Chr04:24319403..24319427 (25 bp)
AAAGCTGCACATACCCAAGAGTTTG
LOC_Os04g41370
Target Sequence 
TGGCACATTCGCCTCACTGGAGAAACTCTCGTTCTTTCACATGCGCAACCTAGAAATATGGCTTCCATCACAGAGAGAAG
CAATTTTCCCAAACCTTCAAGAATTGACTATCACCCAATGCCCAAAATTTAGAGCAGTGCATGTGAAACTCCCAGTTGTC
AAAAGCTTAATCATGTTGTTGAACAACGATAAATTGATTGGATCTAGAGGAGCACTGGAAGGTTTCTCTCAAAACCTGAA
ATCTCTGTCGGTTTCCCTGTGTGACGGGCTATTAGAGTGTTCAGAATGTGAGGGGCTGAGAGAACTTCGAGGTATTGAGG
AACTTCATATTTCAAGGTGCACAGAATTGATTTCTTTGCCCCATGGCATGCAGCATTTGTCATTCCTCCGAACCTTGACA
ATAACAGAGTGCACAAATTTGGAAACTTTCCCAGAATGGTTGAAGAATTTCACCTCTCTGAGATCCTTGCACATATCTAG
TTGTCCAAAGCTGCACATACCCAAGAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis