Browse Element(s) Details


OsAffx.7670.1.S1_at

Description tigr:9640.m02195
TID=OsAffx.7670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=p-nitrophenylphosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g231506/11P-nitrophenylphosphatase, putative, expressed
LOC_Os04g413401/11phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23120NANA12+13067561..13073220retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23130Os.27691.1.S1_x_at4/1112+13078495..13082675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.2.S1_x_at3/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.1.S1_x_at2/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0008967molecular_functionphosphoglycolate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7670.1.S1_at--12--8951Chr12:13093730..13093836 (25 bp)
TGACTGCGACGCGTAGGTGTGATTT
LOC_Os12g23150
OsAffx.7670.1.S1_at--282--3651Chr12:13093367..13093391 (25 bp)
CTTCGTCGTTCGCATATGTGGCGTA
LOC_Os12g23150
OsAffx.7670.1.S1_at--525--6711Chr12:13093360..13093384 (25 bp)
GTTCGCATATGTGGCGTACCTGCAG
LOC_Os12g23150
OsAffx.7670.1.S1_at--388--6272Chr12:13092956..13092980 (25 bp)
GATGTAACTACGATCCCTACTAGCA
LOC_Os12g23150
OsAffx.7670.1.S1_at--330--3331Chr12:13092933..13092957 (25 bp)
CACTCGCCACCTATTTCATATGTAT
LOC_Os12g23150
OsAffx.7670.1.S1_at--250--6631Chr12:13092899..13092923 (25 bp)
GTTGGTGATTCCGTATCTACAGCTT
LOC_Os12g23150
OsAffx.7670.1.S1_at--1027--6891Chr12:13092686..13092911 (25 bp)
GTATCTACAGCTTCTTCTATCAACT
NONE
OsAffx.7670.1.S1_at--181--671Chr12:13092647..13092671 (25 bp)
ATGAATCTGCACCAGCTGGACAGCA
NONE
OsAffx.7670.1.S1_at--348--5651Chr12:13092629..13092653 (25 bp)
GACAGCAGTGACATTGTCCTCTCAC
NONE
OsAffx.7670.1.S1_at--1128--10811NONE
TTGTCCTCTCACTACAGCTGATGAA
NONE
OsAffx.7670.1.S1_at--633--1611Chr12:13091909..13091933 (25 bp)
AGCTGATGAAGTGTGCAATACTGCA
NONE
Target Sequence 
TGACTGCGACGCGTAGGTGTGATTTGGAAGGGCGAGAAGCTGATCGACGGAGTGCTAGAGACGCTCGACATGCTAGATCA
AAGGGCAAGAGGCTGGTATTCGTGACGAACAACTCGACCAAGTCGAGGAAGCAGTACGGGAAGAAGTTTGAGACGCTAGG
ACTAAACGTCAATGAGGAAGAGATCTTCGCTTCGTCGTTCGCATATGTGGCGTACCTGCAGTCCATCGATTTCCCCAAAG
ACAAGAAGGTTTATGTGATTGGAGAGGACGGGATTCTGAAGGAGCTGGAGCTGGCTGGATTTCAGTATCTTGGCGGGCCA
TCTGATGGAGACAAGAAGATAGAACTGAAGCCTGGATTTTACATGGAGCATGACAAAGATGTAACTACGATCCCTACTAG
CACTCGCCACCTATTTCATATGTATAGAATGGTAGTTGGTGATTCCGTATCTACAGCTTCTTCTATCAACTTATTGTCCA
AAAGTATGAATCTGCACCAGCTGGACAGCAGTGACATTGTCCTCTCACTACAGCTGATGAAGTGTGCAATACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis