Browse Element(s) Details


Os.4956.1.S1_at

Description gb:AK071058.1
DB_XREF= gi:32981081
TID=Os.4956.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077M13, full insert sequence.
FL= gb:AK071058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2317011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23120NANA12+13067561..13073220retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23130Os.27691.1.S1_x_at4/1112+13078495..13082675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.2.S1_x_at3/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.1.S1_x_at2/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4956.1.S1_at--593--2911Chr12:13099419..13099443 (25 bp)
AAGGACCCCATTATAATCATCGGAG
LOC_Os12g23170
Os.4956.1.S1_at--174--2311Chr12:13099563..13099583 (21 bp)
AAATGGCATTGACCAGCCAGGCAAT
LOC_Os12g23170
Os.4956.1.S1_at--915--691Chr12:13099582..13099606 (25 bp)
ATGAGACCCTACCTGGTGCACTGTA
LOC_Os12g23170
Os.4956.1.S1_at--388--7811Chr12:13099679..13099703 (25 bp)
GGTCACTGGGTATTTTGCTTGGTCC
LOC_Os12g23170
Os.4956.1.S1_at--918--9391Chr12:13099753..13099777 (25 bp)
TCGTCTATGTAGACCGGAGCACTTT
LOC_Os12g23170
Os.4956.1.S1_at--183--7831Chr12:13099783..13099807 (25 bp)
GGTACCCTAAAGACTCAACACGTTG
LOC_Os12g23170
Os.4956.1.S1_at--5--171Chr12:13099847..13099871 (25 bp)
ATTATCACTGTTGGCAGCTGCTGGA
LOC_Os12g23170
Os.4956.1.S1_at--1100--8011Chr12:13099869..13099893 (25 bp)
GGAGTGCTTTTTTGTTATGCTAGTT
LOC_Os12g23170
Os.4956.1.S1_at--673--6871Chr12:13099958..13099982 (25 bp)
GTATTCTACTTTTTGTACTTCAGAT
LOC_Os12g23170
Os.4956.1.S1_at--1077--6011Chr12:13100044..13100068 (25 bp)
GAGAGGCAGATTTCAATTTTTGGCT
LOC_Os12g23170
Os.4956.1.S1_at--363--5211Chr12:13100070..13100094 (25 bp)
GAATTGCCCATATTTGTGTTTTCCA
LOC_Os12g23170
Target Sequence 
AAGGACCCCATTATAATCATCGGAGAAAATGGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGNCTT
CTTCAGGATACAATNTTTTGATCAGTACCTCCATNAGCTTNAGAGGGCGANCAAGGATGGTGCAAGGGTCACTGGGTATT
TTGCTTGGTCCCNGCTTGACAACTTCGAGTGGCGGCTCNGGGTTCACTTCNANAATTCGGAATCGTCTATGTAGACCGGA
GCACTTTCNCACGGTACCCTAAAGACTCAACACGTTGGTTCAGGAANATGATAAAAAGTNAGGTTTGAGTTGNATTATTA
TCACTGTTGGCAGCTGCTGGAGTGCTTTTTTGTTATGCTAGTTTTGGNNNNANGAATAATAAGATGTCTTGTACTAGTTG
AGAACTTCTTCAGATTTTGNACTTCTAGTATTCTACTTTTTGTACTTCAGATTTTGCAAGCAAGGATGATTTTAGTTTAA
TAGATTCAGGACATCTATATATACTGGTGATAAGAGAGGCAGATTTCAATTTTTGGCTTGAATTGCCCATATTTGTGTTT
TCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis