Browse Element(s) Details


Os.53270.1.S1_at

Description gb:AK071692.1
DB_XREF= gi:32981715
TID=Os.53270.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108B13, full insert sequence.
FL= gb:AK071692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g231909/11tyrosine specific protein phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23140Os.27691.2.S1_x_at3/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.1.S1_x_at2/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein
LOC_Os12g23220NANA12+13127442..13130404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23230NANA12+13130721..13136810retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53270.1.S1_at--604--471Chr12:13108577..13108706 (25 bp)
ATCTGTCGTGTATCTGTGCCCTGAA
LOC_Os12g23190
Os.53270.1.S1_at--568--7291Chr12:13108697..13108721 (25 bp)
GTGCCCTGAACCTTACATGGAGACG
LOC_Os12g23190
Os.53270.1.S1_at--603--551Chr12:13108749..13108773 (25 bp)
ATCCGCCTCTTCCAATTTGGGATTG
LOC_Os12g23190
Os.53270.1.S1_at--385--8211Chr12:13111146..13111170 (25 bp)
GGAATCACCCAGTTCTAATCCATTG
LOC_Os12g23190
Os.53270.1.S1_at--849--1951Chr12:13111277..13111301 (25 bp)
ACTGGATGTCTTGTGGGCTGCTTCA
LOC_Os12g23190
Os.53270.1.S1_at--96--5211Chr12:13111312..13111336 (25 bp)
GAATTGGTGTCTCTCATCAGTCTTT
LOC_Os12g23190
Os.53270.1.S1_at--49--1191Chr12:13111341..13111365 (25 bp)
AGTACCATCGGTATGCTGCTGGAAA
LOC_Os12g23190
Os.53270.1.S1_at--432--2551Chr12:13111409..13111433 (25 bp)
AACTGCATGACGGATTGCCTGCTCA
LOC_Os12g23190
Os.53270.1.S1_at--1162--3311Chr12:13111445..13111469 (25 bp)
CACTACCATGGTTGCCTTCAGAAAA
LOC_Os12g23190
Os.53270.1.S1_at--920--7511Chr12:13111505..13111529 (25 bp)
GTGGAAACTATCTCCTGTGTCATGA
NONE
Os.53270.1.S1_at--1126--2751Chr12:13111602..13111626 (25 bp)
AAGACTCGAGTTACCGGGCATCTGT
NONE
Target Sequence 
ATCTGTCGTGTATCTGTGCCCTGAACCTTACATGGAGACGAATGCCGAGTTCTTGAAGGCGGAGGGGATCCGCCTCTTCC
AATTTGGGATTGAGGGGAACAAGATGTAAGGAATCACCCAGTTCTAATCCATTGCAAAAGAGGAAAGCACCGTACTGGAT
GTCTTGTGGGCTGCTTCAGAAAGCTGCAGAATTGGTGTCTCTCATCAGTCTTTGAAGAGTACCATCGGTATGCTGCTGGA
AAGTCACGGTTGTCAGATCTGAAGTTTATCGAATCATTTGATGTCAACTGCATGACGGATTGCCTGCTCAGGCTCATCTA
CCACTACCATGGTTGCCTTCAGAAAAGCAAGCGCCTGGCATACAGCGAGAGATAAACTACTGTGGAAACTATCTCCTGTG
TCATGAGTATATCCCTGGAGAAGAATTGGTCGGACTATTTTTCCTTTTTGGAGGGGAATTGGTCGGAGTTGTAACACAAA
GACTCGAGTTACCGGGCATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis