Browse Element(s) Details


OsAffx.31842.1.S1_at

Description tigr:9640.m02196
TID=OsAffx.31842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2316011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23120NANA12+13067561..13073220retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23130Os.27691.1.S1_x_at4/1112+13078495..13082675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.2.S1_x_at3/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.1.S1_x_at2/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31842.1.S1_at--864--231Chr12:13096263..13096459 (25 bp)
ATATACAGAGGAGACGCTCATATGA
LOC_Os12g23160
OsAffx.31842.1.S1_at--388--8191Chr12:13096492..13096516 (25 bp)
GGAAGATAGCAGGACATGGACAGCA
LOC_Os12g23160
OsAffx.31842.1.S1_at--179--5671Chr12:13096504..13096528 (25 bp)
GACATGGACAGCAGTTGGATCTTAA
LOC_Os12g23160
OsAffx.31842.1.S1_at--593--5011Chr12:13096514..13096535 (22 bp)
GCAGTTGGATCTTAATCCGGTGACT
LOC_Os12g23160
OsAffx.31842.1.S1_at--360--6411Chr12:13096521..13096664 (25 bp)
GATCTTAATCCGGTGACTGAGGTAC
LOC_Os12g23160
OsAffx.31842.1.S1_at--621--11Chr12:13096528..13096671 (25 bp)
ATCCGGTGACTGAGGTACGTACCAT
LOC_Os12g23160
OsAffx.31842.1.S1_at--397--7851Chr12:13096660..13096684 (25 bp)
GGTACGTACCATGCAGTTTCCAAAT
LOC_Os12g23160
OsAffx.31842.1.S1_at--831--6971Chr12:13096665..13096689 (25 bp)
GTACCATGCAGTTTCCAAATTTAAA
LOC_Os12g23160
OsAffx.31842.1.S1_at--357--4991Chr12:13096672..13096696 (25 bp)
GCAGTTTCCAAATTTAAAGGCGATA
LOC_Os12g23160
OsAffx.31842.1.S1_at--898--9831Chr12:13096686..13096710 (25 bp)
TAAAGGCGATAAGCTCACTGTCATG
LOC_Os12g23160
OsAffx.31842.1.S1_at--883--9791Chr12:13096695..13096719 (25 bp)
TAAGCTCACTGTCATGCCCACTAGT
LOC_Os12g23160
Target Sequence 
ATATACAGAGGAGACGCTCATATGAGTGGGTTGAGGGTGGGCCAGTGGAGGACTGGTGGAAGATAGCAGGACATGGACAG
CAGTTGGATCTTAATCCGGTGACTGAGGTACGTACCATGCAGTTTCCAAATTTAAAGGCGATAAGCTCACTGTCATGCCC
ACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis