Browse Element(s) Details


Os.17244.1.S1_at

Description gb:AK072099.1
DB_XREF= gi:32982122
TID=Os.17244.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119G18, full insert sequence.
FL= gb:AK072099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4133011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17244.1.S1_at--702--6231Chr04:24308018..24308042 (25 bp)
GATGGCTATGCGAACTTCGTTCTAC
LOC_Os04g41330
Os.17244.1.S1_at--1074--991Chr04:24308076..24308100 (25 bp)
AGGATCACTCCTTGGGCAACATTTG
LOC_Os04g41330
Os.17244.1.S1_at--278--731Chr04:24308184..24308208 (25 bp)
ATGATTGCCACTCTGGGACGTGGTC
LOC_Os04g41330
Os.17244.1.S1_at--1133--5751Chr04:24308200..24308224 (25 bp)
GACGTGGTCTTGAGATCCTGCGCCT
LOC_Os04g41330
Os.17244.1.S1_at--947--9831Chr04:24308263..24308287 (25 bp)
TAAAGGAAGCTTTGGGCGCGCTGAT
LOC_Os04g41330
Os.17244.1.S1_at--14--6791Chr04:24308390..24308414 (25 bp)
GTTACCTCTGTACAGTGCATTCTTC
LOC_Os04g41330
Os.17244.1.S1_at--621--3591Chr04:24308407..24308431 (25 bp)
CATTCTTCTTGCTTTTACTGAGGTA
LOC_Os04g41330
Os.17244.1.S1_at--952--8351Chr04:24308457..24308481 (25 bp)
GGCGGTTCTACTTCTGGAGCATTTC
LOC_Os04g41330
Os.17244.1.S1_at--625--8071Chr04:24308472..24308496 (25 bp)
GGAGCATTTCATCCATATCAGCCCA
LOC_Os04g41330
Os.17244.1.S1_at--715--4351Chr04:24308494..24308518 (25 bp)
CCACCAACCTTCTGTACATACATGT
LOC_Os04g41330
Os.17244.1.S1_at--647--5671Chr04:24308538..24308562 (25 bp)
GACATCTCTAATGCTTTCTTCGGGA
LOC_Os04g41330
Target Sequence 
GATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGGCAAAANACAACCTTTCAGGATCACTCCTTGGGCAACA
TTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCANTGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTT
CTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGNNCAANCAAGGGG
CCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCNAAATAAAGACATAACNAAAAAATAA
CTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTC
TTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTGGGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCC
CACCAACCTTCTGTACATACATGTATACAACATATGCCTAATTGACATCTCTAATGCTTTCTTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis