Browse Element(s) Details


Os.17994.1.S1_at

Description gb:AK072486.1
DB_XREF= gi:32982509
TID=Os.17994.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133F23, full insert sequence.
FL= gb:AK072486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4130011/11ribosome recycling factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17994.1.S1_at--551--8851Chr04:24288356..24288375 (20 bp)
TGATGCCTTATGATCCGAGTTCAAT
LOC_Os04g41300
Os.17994.1.S1_at--973--451Chr04:24288010..24288034 (25 bp)
ATCTCATCTCCATTGGGCATCAATC
LOC_Os04g41300
Os.17994.1.S1_at--666--5131Chr04:24287602..24287983 (25 bp)
GCAAACATCCCACCGTTGACAAAGG
LOC_Os04g41300
Os.17994.1.S1_at--558--1011Chr04:24287487..24287511 (25 bp)
AGGTTGTCACTAAATCTGCCGAGGA
LOC_Os04g41300
Os.17994.1.S1_at--480--5591Chr04:24286880..24286904 (25 bp)
GAAATCTGCGTCTGGTATGCCGAAG
LOC_Os04g41300
Os.17994.1.S1_at--852--10251Chr04:24286630..24286654 (25 bp)
TTTGATGCCAACGAGTTCACGGGTT
LOC_Os04g41300
Os.17994.1.S1_at--922--231Chr04:24286582..24286606 (25 bp)
ATATATCTTTTTTGTTTGTGCCCGT
LOC_Os04g41300
Os.17994.1.S1_at--209--10831Chr04:24286567..24286591 (25 bp)
TTGTGCCCGTTCTAACTATGATGTT
LOC_Os04g41300
Os.17994.1.S1_at--303--2491Chr04:24286532..24286556 (25 bp)
AACAGTGTGATACCAAGGGCGGCCT
LOC_Os04g41300
Os.17994.1.S1_at--71--8431Chr04:24286512..24286536 (25 bp)
GGCCTGCCCAGCTTGTGACAAAACA
LOC_Os04g41300
Os.17994.1.S1_at--1118--7892Chr07:5668910..5668932 (22 bp)
GGTTGCAAGGCACTCATGAATTCAC
NONE
Target Sequence 
TGATGCCTTATGATCCGAGTTCAATGAAGTCTATTGAGCATGCGATCATCTCATCTCCATTGGGCATCAATCCAACACCT
GATGGCAACAGGATCATAGCAAACATCCCACCGTTGACAAAGGAGAATATACAGGCACTGTGTAAGGTTGTCACTAAATC
TGCCGAGGATTTCAAACAAAGTATTAGACGAGCGCGCCAAAAGGCACTTGATACGATAAAGAAATCTGCGTCTGGTATGC
CGAAGGATGATGTAAAACGACTTGAGAAGGAGGTTGAAGAATTGACCAAGAAGTTCATAAAGTCAGCAGATGATATGTGC
AAGGCTAAGGAGAAGGAAATCTCTGGAAACTGAGGNCGTTAATCTGGCAGAAGTTTTTTCTTTTACTTACACAACTTTGA
TGCCAACGAGTTCACGGGTTGCAATTCTGCAGCAGCCGGGAAGATATATCTTTTTTGTTTGTGCCCGTTCTAACTATGAT
GTTAGAAATTCGAAACAGTGTGATACCAAGGGCGGCCTGCCCAGCTTGTGACAAAACATTGATTCGGTTGCAAGGCACTC
ATGAATTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis