Browse Element(s) Details


OsAffx.4048.1.S1_x_at

Description tigr:9632.m03933
TID=OsAffx.4048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4129011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4048.1.S1_x_at--262--4091Chr04:24285443..24285467 (25 bp)
CGAGCGCGGGCTGCGACGTCAACAT
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--680--9691Chr04:24285461..24285485 (25 bp)
TCAACATCCCGGACGGCGACGGCTA
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--843--3911Chr04:24285614..24285638 (25 bp)
CGGCGTTCAACAAGGCCGAGGACGT
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--305--2231Chr04:24285623..24285647 (25 bp)
ACAAGGCCGAGGACGTGATCATGGA
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--246--7391Chr04:24285637..24285661 (25 bp)
GTGATCATGGACGAGCTGGGCCGCC
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--481--4551Chr04:24285679..24285703 (25 bp)
GCCCACGTCAAGAAGCACACCAAGT
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--654--1491Chr04:24285692..24285716 (25 bp)
AGCACACCAAGTGCGGGCGCGGCAA
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--708--1931Chr04:24285722..24285746 (25 bp)
ACGGCAAGTCCCTGCGGATGGTCGC
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--486--1591Chr04:24285809..24285833 (25 bp)
AGCTCGGTGGCAGCTCGGCGTTCCA
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--369--9451Chr04:24285823..24285847 (25 bp)
TCGGCGTTCCAGCTGCACCGGCAGA
LOC_Os04g41290
OsAffx.4048.1.S1_x_at--726--6131Chr04:24285903..24285927 (25 bp)
GAGGGAGGTGCACTTCGTGTGCCAG
LOC_Os04g41290
Target Sequence 
CGAGCGCGGGCTGCGACGTCAACATCCCGGACGGCGACGGCTACACCCCGCTCATGCTGGCGGCGAGGGAAGGGCACGCG
GCCGTGTGCGAGCTCCTCATCTCCTACGGCGCGCGGTGCGACACCCGGACCCCGCGCGGCGAGACGGCGCTCTCCCTGGC
GAGGGCCACCGCGGCGTTCAACAAGGCCGAGGACGTGATCATGGACGAGCTGGGCCGCCAGCTCGTCCTCGGGGGCGCCC
ACGTCAAGAAGCACACCAAGTGCGGGCGCGGCAAGCCGCACGGCAAGTCCCTGCGGATGGTCGCCGCGGCGGGCGTGCTC
CGGTGGGGCGGGTCGGGGCGGCGCAACGTGGTGTGCCGGGAGGCCGAGCTCGGTGGCAGCTCGGCGTTCCAGCTGCACCG
GCAGAGGCGGGGCTGCGACGCGTACGAGCCCGGGCTGTTCCGCGTGGCGACGGCGACGGGGAGGGAGGTGCACTTCGTGT
GCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4048.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis