Browse Element(s) Details


Os.27575.2.S1_at

Description gb:CB678131
DB_XREF= gi:29681856
DB_XREF=OSJNEe15L20.f
CLONE=OSJNEe15L20
TID=Os.27575.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27575 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196926.1 (A.thaliana) protoporphyrinogen oxidase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4126010/11Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27575.2.S1_at--607--4871Chr04:24262794..24262818 (25 bp)
GCTTATTGACGATCTTGGCCTACAA
LOC_Os04g41260
Os.27575.2.S1_at--237--8451Chr04:24262809..24262833 (25 bp)
TGGCCTACAAGGCAAACAGCAGTAT
LOC_Os04g41260
Os.27575.2.S1_at--1051--6891Chr04:24262928..24262948 (21 bp)
GTATCCTAACTCACAACACAAGCGT
LOC_Os04g41260
Os.27575.2.S1_at--165--6251Chr04:24262961..24263073 (25 bp)
GATGGAGCACCAACACTGATTCCCT
LOC_Os04g41260
Os.27575.2.S1_at--719--9651Chr04:24263073..24263097 (25 bp)
TCAGATCCCATTGCGCTCATGAAAA
LOC_Os04g41260
Os.27575.2.S1_at--1137--2691Chr04:24263408..24263431 (24 bp)
AAGCTCAAGCTATTTCTGGAACCAT
LOC_Os04g41260
Os.27575.2.S1_at--425--5171Chr04:24263904..24263928 (25 bp)
GCAAGTTTCTTTGAACGCCACTTTG
LOC_Os04g41260
Os.27575.2.S1_at--957--6171NONE
GAGGAGATCCTGAGTCATTATCAAT
NONE
Os.27575.2.S1_at--660--10171Chr04:24264412..24264431 (20 bp)
TATCAATTCGTCATGCATTTCCAGC
LOC_Os04g41260
Os.27575.2.S1_at--317--1191Chr04:24265718..24265741 (24 bp)
AGTATGGCTCTGTCATTGCTGGTGC
LOC_Os04g41260
Os.27575.2.S1_at--477--9111Chr04:24265733..24265757 (25 bp)
TGCTGGTGCCATCTTGTCCAAACTA
LOC_Os04g41260
Target Sequence 
GCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAG
CACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTT
CTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGC
AAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAG
ATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGT
GCCATCTTGTCCAAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27575.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis