Browse Element(s) Details


Os.7694.1.S1_at

Description gb:AK068039.1
DB_XREF= gi:32978057
TID=Os.7694.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131B20, full insert sequence.
FL= gb:AK068039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4122911/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41200Os.23780.1.A1_at11/114+24212531..24221252Lipase family protein, expressed
LOC_Os04g41210NANA4+24225354..24225750hypothetical protein
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7694.1.S1_at--310--5031Chr04:24249394..24249418 (25 bp)
GCAGTGCTGGCTAGTTTGATGACAT
LOC_Os04g41229
Os.7694.1.S1_at--286--8951Chr04:24249413..24249437 (25 bp)
TGACATTTCTCCTTGGTCCTCAAAA
LOC_Os04g41229
Os.7694.1.S1_at--404--9711Chr04:24249432..24249456 (25 bp)
TCAAAACATGTTTGCCTGGCGACAG
LOC_Os04g41229
Os.7694.1.S1_at--319--1031Chr04:24249509..24249533 (25 bp)
AGGTCATCAGTCTCTTCCAAACGAA
LOC_Os04g41229
Os.7694.1.S1_at--797--7211Chr04:24249536..24249560 (25 bp)
GTCGAAGTCGTCTGATCAAACCTTT
LOC_Os04g41229
Os.7694.1.S1_at--648--7351Chr04:24249565..24249589 (25 bp)
GTGAATCGATCAGTCCAGTCTTTTT
LOC_Os04g41229
Os.7694.1.S1_at--1003--5851Chr04:24249604..24249628 (25 bp)
GACCAACCCCTTTTGTTGAGCTGTA
LOC_Os04g41229
Os.7694.1.S1_at--404--4771Chr04:24249680..24249704 (25 bp)
GCTGCTCTGGATGTTAGGCTTCTAG
LOC_Os04g41229
Os.7694.1.S1_at--715--3711Chr04:24249701..24249725 (25 bp)
CTAGCTGTCCTGTTGCTGTGGTAAA
LOC_Os04g41229
Os.7694.1.S1_at--553--11Chr04:24249731..24249755 (25 bp)
ATTGGTTCACCCAGCGGTTAGCAAA
LOC_Os04g41229
Os.7694.1.S1_at--128--6851Chr04:24249778..24249802 (25 bp)
GTATTCTCCGGCCAACATTAGACAA
LOC_Os04g41229
Target Sequence 
GCAGTGCTGGCTAGTTTGATGACATTTCTCCTTGGTCCTCAAAACATGTTTGCCTGGCGACAGGAAATTAAAGGTATAGC
AGGCAGCATATAGCGTGACAAGAGCAAAGTAATGGAGGTCATCAGTCTCTTCCAAACGAAAGGTCGAAGTCGTCTGATCA
AACCTTTACCAGTGAATCGATCAGTCCAGTCTTTTTTCTTTTGTCAGTGTGACCAACCCCTTTTGTTGAGCTGTAAAATT
AATTGAAACTAGACTAGAATTGTTCCTTCCTTTAACAAGGAGCTCTGCTGCTCTGGATGTTAGGCTTCTAGCTGTCCTGT
TGCTGTGGTAAATAGTGATTGGTTCACCCAGCGGTTAGCAAATAATCTGGTTGCTGGTTTCAGGGTATTCTCCGGCCAAC
ATTAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis