Browse Element(s) Details


Os.52201.1.S1_at

Description gb:AK065576.1
DB_XREF= gi:32975594
TID=Os.52201.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028F13, full insert sequence.
FL= gb:AK065576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4131011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52201.1.S1_at--196--3071Chr04:24295680..24295704 (25 bp)
AATCTTGGCGACAAGTATCCTCCTA
LOC_Os04g41310
Os.52201.1.S1_at--718--1131Chr04:24295859..24295883 (25 bp)
AGTGCCTGCAGTACGACCCTACGTT
LOC_Os04g41310
Os.52201.1.S1_at--1020--6691Chr04:24295881..24295905 (25 bp)
GTTCCGGCCATCGATGGGCACCGTT
LOC_Os04g41310
Os.52201.1.S1_at--298--1831Chr04:24295922..24295946 (25 bp)
ACGCCGTCGTGCGAGACCAGCAAGG
LOC_Os04g41310
Os.52201.1.S1_at--752--4351Chr04:24295938..24295962 (25 bp)
CCAGCAAGGCGTGGTCTGATGATCC
LOC_Os04g41310
Os.52201.1.S1_at--354--191Chr04:24296000..24296024 (25 bp)
ATTTGTTCGTGTGAATCAACCGTGT
LOC_Os04g41310
Os.52201.1.S1_at--709--371Chr04:24296014..24296038 (25 bp)
ATCAACCGTGTATATGCCTTGCGTT
LOC_Os04g41310
Os.52201.1.S1_at--1038--251Chr04:24296025..24296049 (25 bp)
ATATGCCTTGCGTTGTGCAGGCTAG
LOC_Os04g41310
Os.52201.1.S1_at--303--11Chr04:24296142..24296166 (25 bp)
ACTTTCCCAAAGCTTAGGAGTCCAT
LOC_Os04g41310
Os.52201.1.S1_at--106--8451Chr04:24296201..24296225 (25 bp)
GGCCATGTGTGCAAGCTAGTTAGAC
LOC_Os04g41310
Os.52201.1.S1_at--203--7011Chr04:24296329..24296353 (25 bp)
GTACTGAGCAGAACACTGAGCTTGT
LOC_Os04g41310
Target Sequence 
AATCTTGGCGACAAGTATCCTCCTACCGGAGCTCTCNAGCTGGGGAGANTCNCGGNGCAGTGCCTGCAGTACGACCCTAC
GTTCCGGCCATCGATGGGCACCGTTGCCCGCGTCATCAACTACGCCGTCGTGCGAGACCAGCAAGGCGTGGTCTGATGAT
CCACGAGGATTTTTTTTTTTTTTTTGCACTTGTTCATTTTGATTTGTTCGTGTGAATCAACCGTGTATATGCCTTGCGTT
GTGCAGGCTAGTTAGACATGCNAGAGATACAATTCTTGCAGTAATAGTTGAAGAGAGACTATATCCAAAAANNCNCTGGT
TGATATAAACTGGTACCGGTAAAACTTTCCCAAAGCTTAGGAGTCCATAGGGGGAAAAAAACAGAACAGAAGGCCTTATT
AAGGCCATGTGTGCAAGCTAGTTAGACGTGCAAGAGTATGCTAGTAGTACAGTAAATCGCTCAATTTTGGATGGAGTTGT
TTCTCTTCTTTTTTTTTCTCCTGAAGATGCATCATCTAAGGAAAAAAAATGTACTGAGCAGAACACTGAGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis