Browse Element(s) Details


OsAffx.14230.1.S1_at

Description tigr:9632.m03939
TID=OsAffx.14230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4135011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14230.1.S1_at--46--5751Chr04:24316571..24316595 (25 bp)
GACGGCGGTGTACCTGATGTGCGGG
LOC_Os04g41350
OsAffx.14230.1.S1_at--816--8731Chr04:24316579..24316603 (25 bp)
TGTACCTGATGTGCGGGTGCGTCGG
LOC_Os04g41350
OsAffx.14230.1.S1_at--230--4631Chr04:24316611..24316635 (25 bp)
GCGTTCGGGAACGACTCGCCGGACA
LOC_Os04g41350
OsAffx.14230.1.S1_at--586--3991Chr04:24316700..24316724 (25 bp)
CGTGGTGCACCTCGTAGGCACGTAC
LOC_Os04g41350
OsAffx.14230.1.S1_at--927--7331Chr04:24316704..24316728 (25 bp)
GTGCACCTCGTAGGCACGTACCAGG
LOC_Os04g41350
OsAffx.14230.1.S1_at--38--7711Chr04:24316816..24316840 (25 bp)
GGGTGCTCCGCGTGGGCTCCCTGGC
LOC_Os04g41350
OsAffx.14230.1.S1_at--750--9311Chr04:24316833..24316857 (25 bp)
TCCCTGGCCGAGATCGAGGTGAGCC
LOC_Os04g41350
OsAffx.14230.1.S1_at--959--6131Chr04:24316848..24316872 (25 bp)
GAGGTGAGCCCGTTCCGTCTGGCGT
LOC_Os04g41350
OsAffx.14230.1.S1_at--751--6691Chr04:24316859..24316883 (25 bp)
GTTCCGTCTGGCGTGGCGCACGGCG
LOC_Os04g41350
OsAffx.14230.1.S1_at--778--5091Chr04:24316876..24316900 (25 bp)
GCACGGCGTTCGTGTGCGTGACCAC
LOC_Os04g41350
OsAffx.14230.1.S1_at--468--8091Chr04:24317026..24317050 (25 bp)
GGAGCGCGCAGTGGCTGTCCCTCCA
LOC_Os04g41350
Target Sequence 
GACGGCGGTGTACCTGATGTGCGGGTGCGTCGGGTACGCGGCGTTCGGGAACGACTCGCCGGACAACCTCCTCACCGGGT
TCGGGTTCTTCGAGCCCTTCTGGCTGCTCGACCTCGCCAACGCCGGCGTCGTGGTGCACCTCGTAGGCACGTACCAGGTG
GTGGCGCAGCCGGTGTTCGCGTTCCTCGACGGGCGCGCCGCGGCGGGCGCGTGGCCCGGGAGCGCGGCGCTGGGCAAGAG
GAGGCGGGTGCTCCGCGTGGGCTCCCTGGCCGAGATCGAGGTGAGCCCGTTCCGTCTGGCGTGGCGCACGGCGTTCGTGT
GCGTGACCACGGCGGCGTCCACGCTGCTCCCGTTCTTCGGCTCCATGGTGGGGCTCATCGGCGCGGCGTCGTTCTGGCCG
CTCACCGTCTACTTCCCCGTGGAGATGTACATCGCGCAGCGCCGGGTGCCGCGGGGGAGCGCGCAGTGGCTGTCCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis