Browse Element(s) Details


Os.27008.1.A1_at

Description gb:CB633245
DB_XREF= gi:29628234
DB_XREF=OSIIEb11P16.r
CLONE=OSIIEb11P16
TID=Os.27008.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27008 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176411.1 (A.thaliana) oligopeptide transporter, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g414109/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27008.1.A1_at--1061--2511Chr04:24332019..24332043 (25 bp)
AACTTCAACAGGACACGCCTTGATC
LOC_Os04g41410
Os.27008.1.A1_at--974--10551Chr04:24331992..24332016 (25 bp)
TTCTTCTTGTTATTGGCAACCTTCG
LOC_Os04g41410
Os.27008.1.A1_at--367--5151Chr04:24331977..24332001 (25 bp)
GCAACCTTCGAGCTGGTGGCATTTA
LOC_Os04g41410
Os.27008.1.A1_at--353--371Chr04:24331953..24331977 (25 bp)
ATCAATTATGCATTCTGGGCTAGGA
LOC_Os04g41410
Os.27008.1.A1_at--238--10391Chr04:24331812..24331836 (25 bp)
TTTTCTTTTGTTAGCCTGTCTGTGT
LOC_Os04g41410
Os.27008.1.A1_at--431--6511Chr04:24331769..24331793 (25 bp)
GATATCCTATAATCTCCATTGGCTT
LOC_Os04g41410
Os.27008.1.A1_at--17--751Chr04:24331690..24331714 (25 bp)
ATGTTATCTCTATCTGTCGCTATCT
LOC_Os04g41410
Os.27008.1.A1_at--283--8711Chr04:24331676..24331700 (25 bp)
TGTCGCTATCTTGCAAGGCCAGAAA
LOC_Os04g41410
Os.27008.1.A1_at--348--1191NONE
AGTAGTTGCGTAACCTGTGTCTTAG
NONE
Os.27008.1.A1_at--707--6891Chr04:24331496..24331520 (25 bp)
GTATCATTTCTGCTTGGTCTTCAAG
LOC_Os04g41410
Os.27008.1.A1_at--848--7811NONE
GGTCTTCAAGCTTCAATTCTTTCTA
NONE
Target Sequence 
AACTTCAACAGGACACGCCTTGATCGCTTCTTCTTGTTATTGGCAACCTTCGAGCTGGTGGCATTTATCAATTATGCATT
CTGGGCTAGGAGATATGCCAACAAGAAAAGGGTCAGTACTGTTAGATCAGACGGCGACAATTTTGGAGCTTAAAGATCCA
AACAGTATGCAATAGATAGGTAAGAGAAAACAAAGAGTTGTGATTAATTTTCTTTTGTTAGCCTGTCTGTGTTGTATAGA
TCGTAACAAAGATATCCTATAATCTCCATTGGCTTATGGCAGCTTGACAGAACTTACAAGTTACAATCAATGCAATCTAG
CGTACAGTGATGTTATCTCTATCTGTCGCTATCTTGCAAGGCCAGAAAATAGATTTTCAATATTGAAAGTAGTTGCGTAA
CCTGTGTCTTAGGAAGAACATCAATATTTGTGGTACCTAAACTGATGACTAACCAGGTTTGTAAAAATAGTATAGCTGAC
TAGTTTTCTGAAGAATGAGAGTATGTACTGTACTGACATAAAAGTATCATTTCTGCTTGGTCTTCAAGCTTCAATTCTTT
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27008.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis