Browse Element(s) Details


Os.10117.1.S1_at

Description gb:AK069132.1
DB_XREF= gi:32979156
TID=Os.10117.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007N05, full insert sequence.
FL= gb:AK069132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4146011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10117.1.S1_at--623--1071Chr04:24348550..24348574 (25 bp)
AGGGCAATCGCCAGAGCCTTTTGGG
LOC_Os04g41460
Os.10117.1.S1_at--535--3671Chr04:24348533..24348557 (25 bp)
CTTTTGGGCGCTGCACCGTAGTGAG
LOC_Os04g41460
Os.10117.1.S1_at--929--9291Chr04:24348461..24348485 (25 bp)
TCCCTTTTTAAGATGGCCGTGCCAC
LOC_Os04g41460
Os.10117.1.S1_at--900--10151Chr04:24348426..24348450 (25 bp)
TATCGGCTCTCTCTAGCTGGGAAGT
LOC_Os04g41460
Os.10117.1.S1_at--1040--10791Chr04:24348347..24348371 (25 bp)
TTGTTCTGTCACCTGGCATGTATTG
LOC_Os04g41460
Os.10117.1.S1_at--1012--3051Chr04:24348271..24348295 (25 bp)
AATCAGGTTGTGTTGGTGTCGAATC
LOC_Os04g41460
Os.10117.1.S1_at--755--10171Chr04:24348218..24348242 (25 bp)
TATACTGGTTGTGCATTGCCGTCAC
LOC_Os04g41460
Os.10117.1.S1_at--297--6891Chr04:24348189..24348213 (25 bp)
GTATAGTTCCGGTGCTAGATGTGCC
LOC_Os04g41460
Os.10117.1.S1_at--884--3111Chr04:24348108..24348132 (25 bp)
AATATTCTTGCTCGTTATTCCTCCA
LOC_Os04g41460
Os.10117.1.S1_at--734--10411Chr04:24348094..24348118 (25 bp)
TTATTCCTCCACCAGGTGTATCTGA
LOC_Os04g41460
Os.10117.1.S1_at--479--7431Chr04:24348079..24348103 (25 bp)
GTGTATCTGACTTGGCAAACCTTGA
LOC_Os04g41460
Target Sequence 
AGGGCAATCGCCAGAGCCTTTTGGGCGCTGCACCGTAGTGAGCCAGCTCTCATCCTGCTTGCCCTTGCTGGCAAGGGTCG
GTGGCTGGCTCCCTTTTTAAGATGGCCGTGCCACCCTCAGTTTCTATCGGCTCTCTCTAGCTGGGAAGTTTTAGGAAGAT
CTGGATGCAGACCAAATTTTATTACGTGGTAGCGACTAGATCATTGTTCTGTCACCTGGCATGTATTGTCAATTTCTCAT
GGTGGAAACTGGGATAATTTCAGCATTGGGTGGGTGAAGAATCAGGTTGTGTTGGTGTCGAATCTTGTATACATGGGAAG
GACTGTACGAGCTATACTGGTTGTGCATTGCCGTCACAAGTGTATAGTTCCGGTGCTAGATGTGCCGGGGAGACGGTTAA
AAACCTGTTATGGACAGAAACAGGAATGAAAATTATCGCTTTAATATTCTTGCTCGTTATTCCTCCACCAGGTGTATCTG
ACTTGGCAAACCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis