Browse Element(s) Details


Os.16617.1.S1_at

Description gb:AK060196.1
DB_XREF= gi:32970214
TID=Os.16617.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F04, full insert sequence.
FL= gb:AK060196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4147011/11ARI, RING finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16617.1.S1_at--199--5171Chr04:24369051..24369075 (25 bp)
GCAAGAGCAGAGCATCCAGTACCAG
LOC_Os04g41470
Os.16617.1.S1_at--1066--2071Chr04:24369117..24369141 (25 bp)
ACATTTGGACGTGTGACCAGTGCAC
LOC_Os04g41470
Os.16617.1.S1_at--1113--1111Chr04:24369135..24369159 (25 bp)
AGTGCACATATGCTAACCCCAGATC
LOC_Os04g41470
Os.16617.1.S1_at--641--2371Chr04:24369166..24369190 (25 bp)
AAACTGCCAGGCTTGTAACAACCAG
LOC_Os04g41470
Os.16617.1.S1_at--785--2631Chr04:24369185..24369209 (25 bp)
AACCAGCATCGATAGCATTACATAG
LOC_Os04g41470
Os.16617.1.S1_at--562--10331Chr04:24369217..24369241 (25 bp)
TTTAGATCTCGACTCCATTGGTTGA
LOC_Os04g41470
Os.16617.1.S1_at--639--5551Chr04:24369242..24369266 (25 bp)
GAAACCTCTGGTTCAAACCTGGTGG
LOC_Os04g41470
Os.16617.1.S1_at--262--6551Chr04:24369356..24369380 (25 bp)
GATTTTCTCAACTCATCATGTGCTA
LOC_Os04g41470
Os.16617.1.S1_at--1139--3551Chr04:24369447..24369471 (25 bp)
CATCATCATCTAGTTCATCCTGTAT
LOC_Os04g41470
Os.16617.1.S1_at--801--7051Chr04:24369492..24369516 (25 bp)
GTAACTCTTGTGTTGTTCTATGGAA
LOC_Os04g41470
Os.16617.1.S1_at--666--6991Chr04:24369524..24369548 (25 bp)
GTACTAGCAGATGTGCGCCACCAAT
LOC_Os04g41470
Target Sequence 
GCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGT
GACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGC
TATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAG
TTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCNTATGCAAATTAGATTTTCTCAACTCA
TCATGTGCTATGGCTNANAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATC
ATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAG
CAGATGTGCGCCACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis