Browse Element(s) Details


Os.23978.1.A1_at

Description gb:CA761034
DB_XREF= gi:25805073
DB_XREF=BR060002A10B04.ab1
CLONE=BR060002A10B04.ab1
TID=Os.23978.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23978 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4146010/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23978.1.A1_at--731--10731Chr04:24351740..24351764 (25 bp)
TTGCATGTGTGCCATTTACCTTCCA
LOC_Os04g41460
Os.23978.1.A1_at--282--10471Chr04:24351725..24351749 (25 bp)
TTACCTTCCAACTTTTGCCTGAACG
LOC_Os04g41460
Os.23978.1.A1_at--256--1891Chr04:24351703..24351727 (25 bp)
ACGTTTCATCAAGTGTAGCTGTTCT
LOC_Os04g41460
Os.23978.1.A1_at--975--6931Chr04:24351689..24351713 (25 bp)
GTAGCTGTTCTCGATGAATTTCCCC
LOC_Os04g41460
Os.23978.1.A1_at--75--9011Chr04:24351675..24351699 (25 bp)
TGAATTTCCCCTCGCAGTAATAAGC
LOC_Os04g41460
Os.23978.1.A1_at--859--4591Chr04:24351652..24351676 (25 bp)
GCGACATGTTTTTGGTTGCTTTGGA
LOC_Os04g41460
Os.23978.1.A1_at--60--6671Chr04:24351638..24351662 (25 bp)
GTTGCTTTGGACTTGTTGGGTTACT
LOC_Os04g41460
Os.23978.1.A1_at--527--2511Chr04:24351596..24351620 (25 bp)
AACATTCAGATGGTGTTTGGTCCAA
LOC_Os04g41460
Os.23978.1.A1_at--994--6711Chr04:24351454..24351478 (25 bp)
GTTCGTGCTATGATCTCTACAGTAC
LOC_Os04g41460
Os.23978.1.A1_at--796--1611NONE
AGCGGGATGAAACCAATGCTTGCAT
NONE
Os.23978.1.A1_at--252--2271Chr04:24351356..24351380 (25 bp)
AAATCTTCGAGTGTGTGTAACTTCA
LOC_Os04g41460
Target Sequence 
TTGCATGTGTGCCATTTACCTTCCAACTTTTGCCTGAACGTTTCATCAAGTGTAGCTGTTCTCGATGAATTTCCCCTCGC
AGTAATAAGCGACATGTTTTTGGTTGCTTTGGACTTGTTGGGTTACTTCATTTTCATATGATGAAACATTCAGATGGTGT
TTGGTCCAATTTGATATTTGACAGTATGTTCAGGAAGCCTATGGTTAGATATCATTGATACAAACAAACAAAGTTTGAAG
TGGAAGTCTGAAATGAGATTTATGAATAGTGGACTTATTTTGTTGAGTTCGTGCTATGATCTCTACAGTACTGCATAAAG
ATAGATATTAATTTTAGCAGCGGGATGAAACCAATGCTTGCATCATTCTTATTAATTTCTAGCAAAATCTTCGAGTGTGT
GTAACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23978.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis