Browse Element(s) Details


OsAffx.26415.1.S1_at

Description tigr:9632.m03952
TID=OsAffx.26415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4148011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26415.1.S1_at--615--1651Chr04:24370463..24370487 (25 bp)
AGCGCAAGCCCCAGAGTGGCATCAC
LOC_Os04g41480
OsAffx.26415.1.S1_at--215--9251Chr04:24370505..24370529 (25 bp)
TCCGGTCCGTGACGACAAGCCAAGC
LOC_Os04g41480
OsAffx.26415.1.S1_at--666--5091Chr04:24370595..24370619 (25 bp)
GCACGCCCCGAGTTCGCATCATGAT
LOC_Os04g41480
OsAffx.26415.1.S1_at--1079--6051Chr04:24370604..24370628 (25 bp)
GAGTTCGCATCATGATCGCCATGCT
LOC_Os04g41480
OsAffx.26415.1.S1_at--126--3391Chr04:24370678..24370702 (25 bp)
CAGCGCCAGCGGTGATCCACGGGAC
LOC_Os04g41480
OsAffx.26415.1.S1_at--461--3391Chr04:24370684..24370708 (25 bp)
CAGCGGTGATCCACGGGACGAACAG
LOC_Os04g41480
OsAffx.26415.1.S1_at--994--4551Chr04:24370728..24370752 (25 bp)
GCGCCGTCGTCGCATGTTCAGTATT
LOC_Os04g41480
OsAffx.26415.1.S1_at--77--7211Chr04:24370733..24370757 (25 bp)
GTCGTCGCATGTTCAGTATTCCCCT
LOC_Os04g41480
OsAffx.26415.1.S1_at--978--731Chr04:24370741..24370765 (25 bp)
ATGTTCAGTATTCCCCTGCTCCTAC
LOC_Os04g41480
OsAffx.26415.1.S1_at--870--2711Chr04:24370834..24370858 (25 bp)
AAGCACCTAGCTACTACGGGCACTA
LOC_Os04g41480
OsAffx.26415.1.S1_at--875--3791Chr04:24370876..24370900 (25 bp)
CTCCGGCGCAGGAGAGTTCGTCCGC
LOC_Os04g41480
Target Sequence 
AGCGCAAGCCCCAGAGTGGCATCACCACGCTCCAGCCCCGGCTCCGGTCCGTGACGACAAGCCAAGCCCCTCGCATCATC
ATCATCACCATGGCCATCATCACCACCGTCATGCTACTGCTACTGCCCCGGCGCACGCCCCGAGTTCGCATCATGATCGC
CATGCTCCGGCGCCGGTGCACTCCAGCTGGCCGTGGCCGGCCCACGCGCCGGCGCCAGCGCCAGCGGTGATCCACGGGAC
GAACAGCCACCTGGCGCCGGCGCCGGCGCCGTCGTCGCATGTTCAGTATTCCCCTGCTCCTACTCCCGGTGACGGCCGCC
ATCAGTCGCCGCCGCCGCCGCCGTCCCCGCCTAGCGCTGACGAAGGCGCTCAAGCACCTAGCTACTACGGGCACTACCCT
TCGCCTGCGCCGGCTCCGGCGCAGGAGAGTTCGTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis