Browse Element(s) Details


Os.6044.1.S1_at

Description gb:AK099916.1
DB_XREF= gi:32985125
TID=Os.6044.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116I01, full insert sequence.
FL= gb:AK072530.1 gb:AK099916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4150011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6044.1.S1_at--400--3111Chr04:24395299..24395323 (25 bp)
AATTTTGATTTCTGAGGTCCCCTAT
LOC_Os04g41500
Os.6044.1.S1_at--9--9311Chr04:24395316..24395340 (25 bp)
TCCCCTATGCGGTGAACTCTTTGAA
LOC_Os04g41500
Os.6044.1.S1_at--1005--591Chr04:24395349..24395580 (25 bp)
ATGCCCTTATCACAAAGTGCCTGCG
LOC_Os04g41500
Os.6044.1.S1_at--1085--2951Chr04:24395633..24395657 (25 bp)
AATGGCGGCGCAAGGCAACTCAGAG
LOC_Os04g41500
Os.6044.1.S1_at--774--10371Chr04:24395799..24395823 (25 bp)
TTTTTTGATGTCTACTCTGCAGCGC
LOC_Os04g41500
Os.6044.1.S1_at--848--1751Chr04:24395831..24395855 (25 bp)
ACCGCAAAGCGTAGTTCCATTAATT
LOC_Os04g41500
Os.6044.1.S1_at--920--10111Chr04:24395878..24395902 (25 bp)
TATGTGTGCCTCAGTTGTTGTGCTT
LOC_Os04g41500
Os.6044.1.S1_at--959--5591Chr04:24395915..24395939 (25 bp)
GAAATTCCACCCTTTTGTAGATCTC
LOC_Os04g41500
Os.6044.1.S1_at--846--6411Chr04:24395934..24395958 (25 bp)
GATCTCCTATGTGGTGTTGCTAAGT
LOC_Os04g41500
Os.6044.1.S1_at--379--7071Chr04:24395973..24395997 (25 bp)
GTAATGAACCTTCTGCATACCGAAA
LOC_Os04g41500
Os.6044.1.S1_at--1035--10451Chr04:24396041..24396065 (25 bp)
TTACGAACTGTTACTACTTGCTTGG
LOC_Os04g41500
Target Sequence 
AATTTTGATTTCTGAGGTCCCCTATGCGGTGAACTCTTTGAAGAAGCTCTATGCCCTTATCACAAAGTGCCTGCGACCCC
CATACGGAGTACTGTATGTGGNTTTCAAAGAAGAACTTGGTTGGTTCCAATGGCGGCGCAAGGCAACTCAGAGCTTTGAT
GGAGGAGGAGGGTGTCCTTGGTGGCCACTTTTTAACCGAGTTAGCTGACCGGGAAATTTGGAAGTTCTTCTTCAAGTAAA
CTAGCAAACCAAGGAGCTGGGAAGATGAAATGGGGCCCTGGCCTTGTGACACAATTTTTTGATGTCTACTCTGCAGCGCT
GTACATACCGCAAAGCGTAGTTCCATTAATTCTTTGGTAATATAGGATTATGATATGTGTGCCTCAGTTGTTGTGCTTGC
TGATGTGTTGGAAATTCCACCCTTTTGTAGATCTCCTATGTGGTGTTGCTAAGTAAAGAAATCAAATTGTAATGAACCTT
CTGCATACCGAAATTATACGGTGATGGCATTAGTCAGAGCACGATACCAGAAATATTTACGAACTGTTACTACTTGCTTG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis