Browse Element(s) Details


Os.52463.1.S1_x_at

Description gb:AK067292.1
DB_XREF= gi:32977310
TID=Os.52463.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105J09, full insert sequence.
FL= gb:AK067292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g415109/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006987biological_processunfolded protein response, activation of signaling protein activity
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004521molecular_functionendoribonuclease activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52463.1.S1_x_at--929--6551NONE
GATTCAACAAGCATGGCTCCTTGGT
NONE
Os.52463.1.S1_x_at--953--8291Chr04:24399830..24399854 (25 bp)
GGCTCCTTGGTTGGGTTCAGGCAAA
LOC_Os04g41510
Os.52463.1.S1_x_at--235--7891Chr04:24399900..24399924 (25 bp)
GGTTCTTACCATGGAGTTGCTTACA
LOC_Os04g41510
Os.52463.1.S1_x_at--210--1011Chr04:24399983..24400007 (25 bp)
AGGTCCAGATCCAGCAACTGATAGT
LOC_Os04g41510
Os.52463.1.S1_x_at--966--2271Chr04:24400074..24400098 (25 bp)
AAATCCCGTGTTTCTTCTGATGAGG
LOC_Os04g41510
Os.52463.1.S1_x_at--754--2131Chr04:24400173..24400197 (25 bp)
ACAGTTCCCAGTTTGCATGTCGTTG
LOC_Os04g41510
Os.52463.1.S1_x_at--679--3091Chr04:24400248..24400272 (25 bp)
AATACATCAGGTACTCCAGAGAGGA
LOC_Os04g41510
Os.52463.1.S1_x_at--228--3271NONE
CAACTTGAGGACTCTGATCTTTCAG
NONE
Os.52463.1.S1_x_at--424--5351Chr04:24400927..24400951 (25 bp)
GAAGATTCTGGTTCAGGCTCTGGAT
LOC_Os04g41510
Os.52463.1.S1_x_at--1069--8291Chr04:24400942..24400966 (25 bp)
GGCTCTGGATTTTCAAATACCCCAT
LOC_Os04g41510
Os.52463.1.S1_x_at--831--311Chr04:24400958..24400982 (25 bp)
ATACCCCATCTTTTGACATGTTTGA
LOC_Os04g41510
Target Sequence 
GATTCAACAAGCATGGCTCCTTGGTTGGGTTCAGGCAAAGTACAGCAAACAACTGATGTAGACGTGAAAGTTAAGCTTGA
CAATGGTTCTTACCATGGAGTTGCTTACATGCATAACTCATTTGACCTGTATAGTCAATTATATGATGGAGGTAGTTGGA
GCATGCAAGGTCCAGATCCAGCAACTGATAGTGCTGGGAAAATTGTTGGTTCTCAAGTCAAATCTAATCTTAAAAGCAAG
AGGAAGACAATTATTGAAAAATCCCGTGTTTCTTCTGATGAGGTTAATGTTGCAAAGGGTTTATTACCGGATAATGCTGG
TCAGAAAAATATAATGAAGCATGATGTTATTCGGGAGACAGTTCCCAGTTTGCATGTCGTTGCAGAGGAAACTGAAAATG
ACAGCAAAACTGTTTCTACGAGCAACAGAGAAAATACATCAGGTACTCCAGAGAGGAGTTTTAGCAGTGTGCATCAACTT
GAGGACTCTGATCTTTCAGACGAAGATTGGAATGATGAAGATTCTGGTTCAGGCTCTGGATTTTCAAATACCCCATCTTT
TGACATGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52463.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis