Browse Element(s) Details


OsAffx.14232.1.S1_x_at

Description tigr:9632.m03959
TID=OsAffx.14232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4154011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14232.1.S1_x_at--1112--4371Chr04:24421560..24421584 (25 bp)
CCAAGAAGATGTCACCGCCGGGAGC
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--870--3231Chr04:24421561..24421585 (25 bp)
CAAGAAGATGTCACCGCCGGGAGCG
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--36--10631Chr04:24421652..24421676 (25 bp)
TTCGAGCTGTTCGACAGGAACGGCG
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--375--7391Chr04:24421757..24421781 (25 bp)
GTGATCGCGCGCATCGACGCCAACG
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--966--1191Chr04:24421806..24421830 (25 bp)
AGTTCGGGGAGCTCTACCGCTCCAT
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--1127--5731Chr04:24421934..24421958 (25 bp)
GACGGGTACATCACGGTGGACGAGC
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--269--7831Chr04:24421938..24421962 (25 bp)
GGTACATCACGGTGGACGAGCTCGG
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--31--2711Chr04:24421988..24422012 (25 bp)
AAGCAGGGCCGCACGGCGGAGGAGT
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--694--1131Chr04:24422010..24422034 (25 bp)
AGTGCCGTCGCATGATCGGCCAGGT
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--155--711Chr04:24422021..24422045 (25 bp)
ATGATCGGCCAGGTCGACCGCGACG
LOC_Os04g41540
OsAffx.14232.1.S1_x_at--641--3631Chr04:24422062..24422086 (25 bp)
CTTCCACGAGTTCCTCCAGATGATG
LOC_Os04g41540
Target Sequence 
CCAAGAAGATGTCACCGCCGGGAGCGGGAGCGGGAGCGGGGAGCAAGAAGAAGCAGCAGCAGCAGGCCGACGCCGCGGAG
CTGGCGCGCGTGTTCGAGCTGTTCGACAGGAACGGCGACGGGCGGATCACGCGGGAGGAGCTGGAGGACTCGCTGGGGAA
GCTCGGGATCCCCGTGCCGGCCGACGAGCTGGCGGCCGTGATCGCGCGCATCGACGCCAACGGCGACGGGTGCGTGGACG
TCGAGGAGTTCGGGGAGCTCTACCGCTCCATCATGGCCGGCGGGGACGACAGCAAGGACGGCCGCGCCAAGGAGGAAGAG
GAGGAGGAGGACGGCGACATGAGGGAGGCGTTCCGGGTGTTCGACGCCAACGGCGACGGGTACATCACGGTGGACGAGCT
CGGCGCCGTGCTGGCGTCGCTGGGGCTGAAGCAGGGCCGCACGGCGGAGGAGTGCCGTCGCATGATCGGCCAGGTCGACC
GCGACGGCGACGGCCGCGTCGACTTCCACGAGTTCCTCCAGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis