Browse Element(s) Details


Os.6328.1.S1_at

Description gb:AK059273.1
DB_XREF= gi:32969291
TID=Os.6328.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C01, full insert sequence.
FL= gb:AK059273.1 gb:AK101636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4157010/11ER33 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6328.1.S1_at--860--5851Chr04:24436576..24436600 (25 bp)
GACCACTACAGCCTGAGGAACCGTG
LOC_Os04g41570
Os.6328.1.S1_at--748--8571Chr04:24436542..24436566 (25 bp)
TGGTTCCAGTGGACCAGACGCTGCA
LOC_Os04g41570
Os.6328.1.S1_at--878--7571Chr04:24436387..24436411 (25 bp)
GGGCGGTGTAGAGTTCCAACTTCCA
LOC_Os04g41570
Os.6328.1.S1_at--541--1111Chr04:24436362..24436386 (25 bp)
AGTGTCTGACCCGATTCATCAAATC
LOC_Os04g41570
Os.6328.1.S1_at--375--9791Chr04:24436316..24436340 (25 bp)
TAAGCAAACCGTGTTTCACTCTCGT
LOC_Os04g41570
Os.6328.1.S1_at--733--7191Chr04:24436293..24436317 (25 bp)
GTCGGATCTCTTGCCTGTAATATAG
LOC_Os04g41570
Os.6328.1.S1_at--5--10191Chr04:24436273..24436297 (25 bp)
TATAGTAGTAGCTGCAACCCTGCCT
LOC_Os04g41570
Os.6328.1.S1_at--16--8691Chr04:24436239..24436263 (25 bp)
TGTGAGACCGTGAGAGTGTGCTACT
LOC_Os04g41570
Os.6328.1.S1_at--296--8791Chr04:24436204..24436228 (25 bp)
TGTTAGCGCCGGACATATGTGTGTA
LOC_Os04g41570
Os.6328.1.S1_at--772--7051Chr04:24436121..24436145 (25 bp)
GTAACTATGTGTCTCTTCAGTAACA
LOC_Os04g41570
Os.6328.1.S1_at--204--5331Chr04:24436019..24436043 (25 bp)
GAAGTGCTCAGTTTCTGCTAGAAGC
NONE
Target Sequence 
GACCACTACAGCCTGAGGAACCGTGGCCTCTGCCTGGTTCCAGTGGACCAGACGCTGCAGCTGACGCAGAGCAACGGCGC
CGACCTGTGGGCGCCGGCGAACACGACCAGGCGCAGGTGAACGGAGGAACCGGCCTGGAGGCTCGGGGGTCTAAGAGGCC
TAGAGGAGGAGGGGAGCACTTTTGTCTGGGGGCGGTGTAGAGTTCCAACTTCCAAGTGTCTGACCCGATTCATCAAATCT
CCTAACAAAGCAAAAACTAATAAGCAAACCGTGTTTCACTCTCGTCGGATCTCTTGCCTGTAATATAGTAGTAGCTGCAA
CCCTGCCTGCAGGTCGGTGTGAGACCGTGAGAGTGTGCTACTGATGAGTCTGTGTTAGCGCCGGACATATGTGTGTAATC
ATCATACATAGCGAGGTGATAGTACTAGACTACCTGATGTGCCCATATGTGATATGTAACTATGTGTCTCTTCAGTAACA
TGATAGTAGCAGCATGTTGCTGCTAGCAACCAAGTTCAATGTGATTGAGTACATCAGCCCNTGCTGTAGTTTTTGTAAGA
AGTGCTCAGTTTCTGCTAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis