Browse Element(s) Details


Os.51458.1.S1_at

Description gb:AK064114.1
DB_XREF= gi:32974132
TID=Os.51458.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H12, full insert sequence.
FL= gb:AK064114.1 gb:AK062853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4158011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41620Os.7991.1.S1_at11/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41620Os.36593.2.S1_x_at1/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41630OsAffx.15880.1.S1_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.15880.1.S1_s_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.31575.1.S1_x_at1/114+24472435..24473094hypothetical protein
LOC_Os04g41640NANA4+24473621..24474222Chitin recognition protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51458.1.S1_at--327--9851Chr04:24448718..24448742 (25 bp)
TACAGAGGCTATTTTCGCCCACATG
LOC_Os04g41580
Os.51458.1.S1_at--311--10031Chr04:24448566..24448590 (25 bp)
TAGACGGTCTGTTCTTTACTGCATT
LOC_Os04g41580
Os.51458.1.S1_at--481--131Chr04:24448544..24448568 (25 bp)
ATTCAGTTTTTCTTGCGTAGTGCAG
LOC_Os04g41580
Os.51458.1.S1_at--801--6711Chr04:24448459..24448483 (25 bp)
GTTCGTCTGGACAATTTTGCCGTTT
LOC_Os04g41580
Os.51458.1.S1_at--1130--6791Chr04:24448438..24448462 (25 bp)
GTTTTTGAAACCTCGCTGCTATGAT
LOC_Os04g41580
Os.51458.1.S1_at--726--10111Chr04:24448419..24448443 (25 bp)
TATGATGTGATCGTCTGCCGGTCAG
LOC_Os04g41580
Os.51458.1.S1_at--253--7771Chr04:24448385..24448409 (25 bp)
GGTGACAACTTGAATGCTGCATCTG
LOC_Os04g41580
Os.51458.1.S1_at--13--7431Chr04:24448266..24448290 (25 bp)
GTGTTCTATGTTTTGTCCAACTCCC
LOC_Os04g41580
Os.51458.1.S1_at--387--731Chr04:24448240..24448264 (25 bp)
ATGTTGGTTCTTTGTTGGCCTATCT
LOC_Os04g41580
Os.51458.1.S1_at--637--6611Chr04:24448227..24448251 (25 bp)
GTTGGCCTATCTGAGCTATCTAGAG
LOC_Os04g41580
Os.51458.1.S1_at--1035--7631Chr04:24448194..24448218 (25 bp)
GGGAGCAACTATTTCTTCCAACCTG
LOC_Os04g41580
Target Sequence 
TACAGAGGCTATTTTCGCCCACATGCCCAGGAATCATAGTTCTGATGATTGNAGGATCCCTTTGGACTCTTCTCAAGATT
TCAGNGNTATGTTGTAACCGTGCATAGGTAGGCACTAGTTGCATGGNCNGGTGCAGTGAANGCGCATGGAGGAAACTAGA
CGGTCTGTTCTTTACTGCATTCAGTTTTTCTTGCGTAGTGCAGCTGAATACTACGTTATATATTGTCTGTATTGTTCATT
ACAGAACATAAAGGAAGGTGATAGTTCGTCTGGACAATTTTGCCGTTTTTGAAACCTCGCTGCTATGATGTGATCGTCTG
CCGGTCAGTTAGGTGCAGGTGACAACTTGAATGCTGCATCTGATTCATCATAACTACAAAGAGTACCAGCTATACCCAAT
GAATGCAGCAAAAAATGTACCTGTAAGCTGTGGTCACTGTAAGCTTTGTAAATTTTGTGTTCTATGTTTTGTCCAACTCC
CCATGTTGGTTCTTTGTTGGCCTATCTGAGCTATCTAGAGTGATTTATGGGAGCAACTATTTCTTCCAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis