Browse Element(s) Details


Os.55009.1.S1_at

Description gb:AK107304.1
DB_XREF= gi:32992513
TID=Os.55009.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C12, full insert sequence.
FL= gb:AK107304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4157011/11ER33 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55009.1.S1_at--1141--6131Chr04:24440117..24440141 (25 bp)
GAGGGTACTGATGCTAGCGTCGCCA
LOC_Os04g41570
Os.55009.1.S1_at--552--4851Chr04:24440105..24440129 (25 bp)
GCTAGCGTCGCCATGGTTAAAACTT
LOC_Os04g41570
Os.55009.1.S1_at--89--3731Chr04:24440078..24440102 (25 bp)
CTACGCTTAAATTGCAGCCTGATAA
LOC_Os04g41570
Os.55009.1.S1_at--473--311Chr04:24440046..24440070 (25 bp)
ATACTACGGGTCAGGTGGCAGCTAT
LOC_Os04g41570
Os.55009.1.S1_at--357--3391Chr04:24440028..24440052 (25 bp)
CAGCTATCCGTCAGGGTTTCAGTCT
LOC_Os04g41570
Os.55009.1.S1_at--642--691Chr04:24439949..24439973 (25 bp)
ATGAGAATGAGATCGCTCGGCTGCC
LOC_Os04g41570
Os.55009.1.S1_at--592--9451Chr04:24439933..24439957 (25 bp)
TCGGCTGCCGGTGCTTGGAAAACCA
LOC_Os04g41570
Os.55009.1.S1_at--459--4991Chr04:24439890..24439914 (25 bp)
GCATGCCGCTGCTAGTTGACAAATT
LOC_Os04g41570
Os.55009.1.S1_at--526--10391Chr04:24439783..24439807 (25 bp)
TTTTCCAGAGCTTTTGTTCCACACC
LOC_Os04g41570
Os.55009.1.S1_at--122--351Chr04:24439721..24439745 (25 bp)
ATAAGCTGGTGCATGTATATCCTAA
LOC_Os04g41570
Os.55009.1.S1_at--171--9871Chr04:24439579..24439603 (25 bp)
TACATGGTTCATGCAGGCTCAAAGT
LOC_Os04g41570
Target Sequence 
GAGGGTACTGATGCTAGCGTCGCCATGGTTAAAACTTAACTACGCTTAAATTGCAGCCTGATAAAAGATCGATACTACGG
GTCAGGTGGCAGCTATCCGTCAGGGTTTCAGTCTGAAGCGGTTTAGGTGAAGAGCTGGAGAAGGAGTAAATGCATGTGTG
TGTTGCTGATGAGAATGAGATCGCTCGGCTGCCGGTGCTTGGAAAACCACCCGCCCGGCCGACGCGTGCATGCCGCTGCT
AGTTGACAAATTCCTCAATCACACGCCCCCCGCCACCACCACCACCACCACCAGCATGCATGCATCACCAAAACAGACGA
GCGTTTTGTCCTTTTTTTCCAGAGCTTTTGTTCCACACCTCTCCCATTTCTTCAGATAGGAAAAATTTAAAGAAATATAA
GCTGGTGCATGTATATCCTAAGTGGTGTTTGGTTGGAGGGACTAAAGTAGGGCTAAACTTTAACCCCTTTCTCGAAAACA
TAAGTTATAGGGGCTAAAGTTTAGCCCATCTCTCCCAAACACCCCCCTAGTACTGCAGTACATGGTTCATGCAGGCTCAA
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis