Browse Element(s) Details


Os.11863.1.S1_x_at

Description gb:AK102780.1
DB_XREF= gi:32987989
TID=Os.11863.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K01, full insert sequence.
FL= gb:AK102780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4155011/11group II intron splicing factor CRS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11863.1.S1_x_at--585--5251Chr04:24427756..24427780 (25 bp)
GAATCCGAGGATCTCTCTGACATTT
LOC_Os04g41550
Os.11863.1.S1_x_at--265--5951Chr04:24427822..24427846 (25 bp)
GAGCAACCGTTGTATCTAGATAAGC
LOC_Os04g41550
Os.11863.1.S1_x_at--283--2691Chr04:24427843..24427867 (25 bp)
AAGCTGGATAAGTTTCCCTCAGAAA
LOC_Os04g41550
Os.11863.1.S1_x_at--788--1251Chr04:24427910..24427934 (25 bp)
AGATTGCTTCCCTTTCTGATAGGAC
LOC_Os04g41550
Os.11863.1.S1_x_at--40--6511Chr04:24427927..24427951 (25 bp)
GATAGGACCGATTCATCTGCTAAAG
LOC_Os04g41550
Os.11863.1.S1_x_at--1063--431Chr04:24427987..24428011 (25 bp)
ATCTTCTTGAGAGCTAGTTCATTGC
LOC_Os04g41550
Os.11863.1.S1_x_at--952--4091Chr04:24428053..24428077 (25 bp)
CGACATCTAATGTGCACTGCCAAAA
LOC_Os04g41550
Os.11863.1.S1_x_at--28--151Chr04:24428221..24428245 (25 bp)
ATTTAACCTGAAGTACTGCAACCGG
LOC_Os04g41550
Os.11863.1.S1_x_at--536--10851Chr04:24428247..24428271 (25 bp)
TTGGGAGGTTCTGGCGTTTGCTCTC
LOC_Os04g41550
Os.11863.1.S1_x_at--433--6851Chr04:24428262..24428286 (25 bp)
GTTTGCTCTCATGTTCCCTGAAACA
LOC_Os04g41550
Os.11863.1.S1_x_at--701--1731Chr04:24428286..24428310 (25 bp)
ACCATTCCGTTTCTCAGTTGTTTAG
LOC_Os04g41550
Target Sequence 
GAATCCGAGGATCTCTCTGACATTTTTGAGACGGACTCAGAGGAGGAGCAGGTACAGGAAAGCAAGGAGCAACCGTTGTA
TCTAGATAAGCTGGATAAGTTTCCCTCAGAAAATAATGACAATGAACCAGATGATTTCGAAGAGCATCTACGAAAGATTG
CTTCCCTTTCTGATAGGACCGATTCATCTGCTAAAGAACTCAAAGTATCCGAGCTTGATGAGATTGATAAAATCTTCTTG
AGAGCTAGTTCATTGCTGAAGAAAAGGTGACAGTTGGGAATTTGTACACAGTGTTCACGACATCTAATGTGCACTGCCAA
AAAGCATTTATATGCAGCACAAGCATCTTGAAAGAAGATCTGAGATATATCGGTAACAAAGTGGAAAGTCATGTATTAAT
TCACAGATGCTGCTGAGAGCGGAGAGGATTTGGTATTTCATAATCTTGCTGGGATTTAGTGAGCTATTTAACCTGAAGTA
CTGCAACCGGTTTGGGAGGTTCTGGCGTTTGCTCTCATGTTCCCTGAAACACCATTCCGTTTCTCAGTTGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11863.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis