Browse Element(s) Details


Os.7991.1.S1_at

Description gb:AB003194.1
DB_XREF= gi:4426561
TID=Os.7991.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7991 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for chitinase IIb, complete cds.
PROD=chitinase IIb
FL= gb:AK099973.1 gb:AB003194.1 gb:AK060363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4162011/11Endochitinase A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41620Os.7991.1.S1_at11/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41620Os.36593.2.S1_x_at1/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41630OsAffx.15880.1.S1_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.15880.1.S1_s_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.31575.1.S1_x_at1/114+24472435..24473094hypothetical protein
LOC_Os04g41640NANA4+24473621..24474222Chitin recognition protein, expressed
LOC_Os04g41650OsAffx.7362.1.S1_x_at1/114+24477559..24478422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41660NANA4+24481120..24483194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.2.S1_s_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.1.S1_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41680Os.10166.1.S1_at11/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.51172.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.2692.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7991.1.S1_at--227--9371Chr04:24469196..24469220 (25 bp)
TCGACGGGCTAAGGGACCCAGACAA
LOC_Os04g41620
Os.7991.1.S1_at--617--9051Chr04:24468857..24468881 (25 bp)
TGCATACGTGCACGGTACGTACATG
LOC_Os04g41620
Os.7991.1.S1_at--514--3331Chr04:24468847..24468871 (25 bp)
CACGGTACGTACATGCTGGAAGCTA
LOC_Os04g41620
Os.7991.1.S1_at--572--3531Chr04:24468836..24468860 (25 bp)
CATGCTGGAAGCTAAGTGACGTCAA
LOC_Os04g41620
Os.7991.1.S1_at--127--7371Chr04:24468821..24468845 (25 bp)
GTGACGTCAAAGAGTTTAGTACTAA
LOC_Os04g41620
Os.7991.1.S1_at--21--7411Chr04:24468793..24468817 (25 bp)
GTGATCTTTCTATTCGATGTTACTC
LOC_Os04g41620
Os.7991.1.S1_at--650--4051Chr04:24468779..24468803 (25 bp)
CGATGTTACTCTATCTTAGGGCGGA
LOC_Os04g41620
Os.7991.1.S1_at--1136--9651Chr04:24468773..24468797 (25 bp)
TACTCTATCTTAGGGCGGAGTAAGT
LOC_Os04g41620
Os.7991.1.S1_at--997--3071Chr04:24468731..24468755 (25 bp)
AATAAAATGTTAGGATCGCGGGATC
LOC_Os04g41620
Os.7991.1.S1_at--243--9331Chr04:24468716..24468740 (25 bp)
TCGCGGGATCGAAAGATGAGTAAAC
LOC_Os04g41620
Os.7991.1.S1_at--571--6291Chr04:24468702..24468726 (25 bp)
GATGAGTAAACATGTGTACCGGTGG
LOC_Os04g41620
Target Sequence 
TCGACGGGCTAAGGGACCCAGACAAGGTGGNCGCAGGACCCGACAATCTCTTTCAAGACGGCGCTCTGGTTCTGGATGAA
CAACGTGCACCAGGTGATGTCGCAGGGGTTTGGCGCCACCATCCGGGCCATCAACGGTGCGCTCGAGTGCAACGGGAAGA
ACCCCGGTGCCGTCAANCGCAAGGGTAAACTACTACAAGGACTACTGCCGCCAGTTCGGCGTCAGCCCGGGGGGCAACCT
CTACTGTTGAGTTGCATGCACACGCTGCTCGGCTCATCGTGATCGACTGAATAATGAACAGAGTAATAATAATGAATAAA
ACGTTTGGTGCGTACGTACATTGCATACGTGCACGGTACGTACATGCTGGAAGCTAAGTGACGTCAAAGAGTTTAGTACT
AAAAAGTGATCTTTCTATTCGATGTTACTCTATCTTAGGGCGGAGTAAGTATAAATGTGTAATAAGAAATAAAATGTTAG
GATCGCGGGATCGAAAGATGAGTAAACATGTGTACCGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis